VSD165
Library VS
(Link to library)
Clone ID VSD165
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID VSD165P
(Link to Original site)
Representative DNA sequence
>VSD165 (VSD165Q) /CSM/VS/VSD1-C/VSD165Q.Seq.d/
ATTTGGGAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTAACCACCAGTA
GTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAATGGTCCAATTT
TAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAACGTATCCCAG
AACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTTACCTCAAGTG
ATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGAACACCAATCT
TCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAAAGAGATCCAA
GAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTCGGTAATAATA
CTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCATACACAAAAAC
GTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTAGGTCAAACAC
CAGAATCAACACATCAAGTXXXXXXXXXXACTCATCGTCATCGTTTAGGTGTAAACTATC
AACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTG
ATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTT
TCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCG
CTGCTCGTCAACCATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATA
GACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCG
GTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAG
ATTTAGGTGCTCGTTTATGTAAGGGTCTTGGTATTGATGTTAATGATGTCATCAAATTCG
CTGCTAGATCAAACTTGTAAATCAATATATTAAAAATAATAAAAAAATAAAAAAATAAAA
AAAAATAAAAAATTAAATCTCAATCTTTTTTTAATTATAAAAAAAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence
lgk*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRERIPE
RVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSERDPR
GFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFLGQTP
ESTHQ---

---THRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPH
PEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRFVSNLVGHMSGVTIKEI
QVRAVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSNL*inilkiikk*knkkk*kiks
qsffnykkk


Translated Amino Acid sequence (All Frames)
Frame A:
iwenk*ink*icqlqf*ppvvvhqliti*tq*pqvlmvqf*fkisl*linllisivnvsq
nvlymlkvlvpmvisklpqvmyqngvklns*iklvrehqsspvslllvvkkvhpilkeiq
evslsnfilkkvtliwsviilqfslfvihqnsqisfihknvihkqivkiqicfgif*vkh
qnqhik---

---THRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPH
PEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRFVSNLVGHMSGVTIKEI
QVRAVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSNL*inilkiikk*knkkk*kiks
qsffnykkk

Frame B:
fgkink*inkyvsssfnhq*wftn**qfklndrrc*wsnfnsrfhfn**tcsfrs*typr
tcctc*rcwcpwlfrsylk*ctkmv*s*ilk*sw*entnlhpflycww*krfirf*krsk
rfrcqily*rr*l*ygr**yssflys*sikiprfhsytkt*stnkl*rskyvlgffrsnt
rintss---

---liviv*v*tinksqsivhsp*rvvlkttnvmvswlsmvmvvkvqtinqtlsvvqshi
qnllninltslvsllvnhtiiqmttlfnqviyidsclkmpnlvssli*svtcpvspskkf
kfvpfqtftrltki*vlvyvrvlvlmlmmssnslldqtcksiy*k**knkkikknkklnl
nlfliikkn

Frame C:
lgk*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRERIPE
RVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSERDPR
GFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFLGQTP
ESTHQ---

---ssssfrcklstnpsqlsirrkgwc*klpt*wfhgcqw*ww*rsklstklfrwsrats
ricst*i*rlwfrcsstiqssk*rlcstr*fi*thv*rcqisfrl*fsrshvrchhqrns
sscrfkllqg*qrfrcsfm*gswy*c**chqirc*iklvnqyiknnkkikk*kkikn*is
iff*l*kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD165 (VSD165Q) /CSM/VS/VSD1-C/VSD165Q.Seq.d/ 1959 0.0
VFM644 (VFM644Q) /CSM/VF/VFM6-B/VFM644Q.Seq.d/ 1043 0.0
VFF539 (VFF539Q) /CSM/VF/VFF5-B/VFF539Q.Seq.d/ 1043 0.0
VFA796 (VFA796Q) /CSM/VF/VFA7-D/VFA796Q.Seq.d/ 1043 0.0
VFA635 (VFA635Q) /CSM/VF/VFA6-B/VFA635Q.Seq.d/ 1043 0.0
VFA593 (VFA593Q) /CSM/VF/VFA5-D/VFA593Q.Seq.d/ 1043 0.0
SFK359 (SFK359Q) /CSM/SF/SFK3-C/SFK359Q.Seq.d/ 1043 0.0
SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/ 1043 0.0
SFJ415 (SFJ415Q) /CSM/SF/SFJ4-A/SFJ415Q.Seq.d/ 1043 0.0
SFF672 (SFF672Q) /CSM/SF/SFF6-C/SFF672Q.Seq.d/ 1043 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1043 0.0 2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 955 0.0 4
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 111 4e-44 5
AP004595|AP004595.1 Oceanobacillus iheyensis HTE831 genomic DNA, section 3/13. 72 3e-24 5
AE006036|AE006036.1 Pasteurella multocida PM70 section 3 of 204 of the complete genome. 98 1e-18 2
AJ005939|AJ005939.1 Methanosarcina barkeri kat gene. 68 1e-17 3
AX536932|AX536932.1 Sequence 533 from Patent WO02064766. 101 1e-17 2
AB006327|AB006327.1 Candida albicans mRNA for catalase, complete cds. 94 3e-15 2
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing said catalase, and process for preparing catalase using the genetic engineering technology. 68 5e-15 3
BH404083|BH404083.1 AG-ND-173L2.TR ND-TAM Anopheles gambiae genomic clone AG-ND-173L2, DNA sequence. 56 2e-14 3
dna update 2003. 8.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 372 e-101
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c... 285 2e-75
(O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 280 9e-74
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62... 274 5e-72
(Q9XZD5) RecName: Full=Peroxisomal catalase; EC=1.11.1.... 269 2e-70
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027... 263 8e-69
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 263 8e-69
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 261 2e-68
(P90682) RecName: Full=Catalase; EC=1.11.1.6; &Y10611_... 261 2e-68
CQ796267_1(CQ796267|pid:none) Sequence 43 from Patent WO20040270... 261 4e-68
protein update 2009. 7.29
PSORT

psg: 0.89 gvh: 0.57 alm: 0.44 top: 0.40 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: extracellular, including cell wall
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VSD165 is cyt

5' end seq. ID VSD165F
5' end seq.
>VSD165F.Seq
ATTTGGGAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTAACCACCAGTA
GTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAATGGTCCAATTT
TAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAACGTATCCCAG
AACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTTACCTCAAGTG
ATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGAACACCAATCT
TCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAAAGAGATCCAA
GAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTCGGTAATAATA
CTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCATACACAAAAAC
GTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTAGGTCAAACAC
CAGAATCAACACATCAAGT----------
Length of 5' end seq. 559
3' end seq. ID VSD165Z
3' end seq.
>VSD165Z.Seq
----------ACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTG
TCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAA
TGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACA
TCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAA
TCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGC
CAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAAT
TCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATG
TAAGGGTCTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTTGTA
AATCAATATATTAAAAATAATAAAAAAATAAAAAAATAAAAAAAAATAAAAAATTAAATC
TCAATCTTTTTTTAATTATAAAAAAAAAT
Length of 3' end seq. 559
Connected seq. ID VSD165P
Connected seq.
>VSD165P.Seq
ATTTGGGAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTAACCACCAGTA
GTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAATGGTCCAATTT
TAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAACGTATCCCAG
AACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTTACCTCAAGTG
ATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGAACACCAATCT
TCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAAAGAGATCCAA
GAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTCGGTAATAATA
CTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCATACACAAAAAC
GTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTAGGTCAAACAC
CAGAATCAACACATCAAGT----------ACTCATCGTCATCGTTTAGGTGTAAACTATC
AACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTG
ATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTT
TCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCG
CTGCTCGTCAACCATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATA
GACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCG
GTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAG
ATTTAGGTGCTCGTTTATGTAAGGGTCTTGGTATTGATGTTAATGATGTCATCAAATTCG
CTGCTAGATCAAACTTGTAAATCAATATATTAAAAATAATAAAAAAATAAAAAAATAAAA
AAAAATAAAAAATTAAATCTCAATCTTTTTTTAATTATAAAAAAAAAT
Length of connected seq. 1118
Full length Seq ID -
Full length Seq. -
Length of full length seq. -