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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD156
Library VS
(Link to library)
Clone ID VSD156
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15079-1
Original site URL
Representative seq. ID VSD156P
(Link to Original site)
Representative DNA sequence 
>VSD156 (VSD156Q) /CSM/VS/VSD1-C/VSD156Q.Seq.d/
CAAATACACAATGGCCATCGATAAATCCAAAAGATTCTTAAGAAAGACCGGTAGAAAGAC
TTTAGTCTCTCAAAATCCATACCATGCACTCTTAGTCAAATTATACCGTTTCTTAGCCCG
TAGAACCAACTCCAAGTTCAACAAGGTTGTCTTAAAGAGATTATTACAAACTAAAACCAA
TAGACCACCAGTTTCAATCTCAAGAATTGCCAATTTAATGAAGGACAGAAAGAGCGGTAA
GATTGCTGTTTGTGTTGGTACCGTTGTTGATGATGAAAGATTATTAGACTGCCCAAAACT
CACTGTTTGTGCATTAAGATTCACTGAAACTGCTCGTTCAAGAATCGTCAAAGCTGGTGG
TAAAGCATTATCTTTCGATCAATTCGCTTTAGTTAGACCAAGAGGTAACAACACTTTCTT
AATCAAAGGTGTTACCAAAGCTAGAGAAGTCTACAAACATTTCGGTAGAGCTCCAGGTTT
ACCAGGTTCCCATGCTCGTCCXXXXXXXXXXCCACGCGTCCCGCAAATACACAATGGCCA
TCGATAAATCCAAAAGATTCTTAAGAAAGACCGGTAGAAAGACTTTAGTCTCTCAAAATC
CATACCATGCACTCTTAGTCAAATTATACCGTTTCTTAGCCCGTAGAACCAACTCCAAGT
TCAACAAGGTTGTCTTAAAGAGATTATTACAAACTAAAACCAATAGACCACCAGTTTCAA
TCTCAAGAATTGCCAATTTAATGAAGGACAGAAAGAGCGGTAAGATTGCTGTTTGTGTTG
GTACCGTTGTTGATGATGAAAGATTATTAGACTGCCCAAAACTCACTGTTTGTGCATTAA
GATTCACTGAAACTGCTCGTTCAAGAATCGTCAAAGCTGGTGGTAAAGCATTATCTTTCG
ATCAATTCGCTTTAGTTAGACCAAGAGGTAACAACACTTTCTTAATCAAAGGTGTTACCA
AAGCTAGAGAAGTCTACAAACATTTCGGTAGAGCTCCAGGTTTACCAGGTTCCCATGCTC
GTCCTTATGTCCGTTCAGAAGGTATTAAATTCCAAAGATCAAAGACCAGAAATCCATAAA
GGCAAAAAGNAAAATAAAGTCGCCCATTAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
KYTMAIDKSKRFLRKTGRKTLVSQNPYHALLVKLYRFLARRTNSKFNKVVLKRLLQTKTN
RPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARSRIVKAGG
KALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHAR---

---HASRKYTMAIDKSKRFLRKTGRKTLVSQNPYHALLVKLYRFLARRTNSKFNKVVLKR
LLQTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARS
RIVKAGGKALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHARPYVRSEG
IKFQRSKTRNP*rqkxk*srplk
Translated Amino Acid sequence (All Frames) 
Frame A:
qihnghr*iqkilkkdr*kdfslsksipctlsqiipflsp*nqlqvqqgclkeiitn*nq
*ttsfnlkncqfnegqker*dcclcwyrc***kiirlpkthclcikih*ncsfknrqsww
*siifrsirfs*tkr*qhflnqrcyqs*rslqtfr*ssrftrfpcss---

---prvpqihnghr*iqkilkkdr*kdfslsksipctlsqiipflsp*nqlqvqqgclke
iitn*nq*ttsfnlkncqfnegqker*dcclcwyrc***kiirlpkthclcikih*ncsf
knrqsww*siifrsirfs*tkr*qhflnqrcyqs*rslqtfr*ssrftrfpcsslcpfrr
y*ipkikdqksikakxkikspik

Frame B:
KYTMAIDKSKRFLRKTGRKTLVSQNPYHALLVKLYRFLARRTNSKFNKVVLKRLLQTKTN
RPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARSRIVKAGG
KALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHAR---

---HASRKYTMAIDKSKRFLRKTGRKTLVSQNPYHALLVKLYRFLARRTNSKFNKVVLKR
LLQTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARS
RIVKAGGKALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHARPYVRSEG
IKFQRSKTRNP*rqkxk*srplk

Frame C:
ntqwpsinpkds*erpverl*slkihtmhs*snytvs*pveptpsstrls*rdyyklkpi
dhqfqsqelpi**rteravrllfvlvpllmmkdy*taqnslfvh*dslkllvqessklvv
khylsinsl*ldqevttls*skvlpklekstnisvelqvyqvpmlv---

---trpantqwpsinpkds*erpverl*slkihtmhs*snytvs*pveptpsstrls*rd
yyklkpidhqfqsqelpi**rteravrllfvlvpllmmkdy*taqnslfvh*dslkllvq
essklvvkhylsinsl*ldqevttls*skvlpklekstnisvelqvyqvpmlvlmsvqkv
lnskdqrpeihkgkkxnkvah*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD156 (VSD156Q) /CSM/VS/VSD1-C/VSD156Q.Seq.d/                       2141   0.0
VSD895 (VSD895Q) /CSM/VS/VSD8-D/VSD895Q.Seq.d/                       1178   0.0
VSD778 (VSD778Q) /CSM/VS/VSD7-D/VSD778Q.Seq.d/                       1166   0.0
VSJ710 (VSJ710Q) /CSM/VS/VSJ7-A/VSJ710Q.Seq.d/                       1154   0.0
VSI379 (VSI379Q) /CSM/VS/VSI3-D/VSI379Q.Seq.d/                       1154   0.0
VSE355 (VSE355Q) /CSM/VS/VSE3-C/VSE355Q.Seq.d/                       1154   0.0
VSD169 (VSD169Q) /CSM/VS/VSD1-C/VSD169Q.Seq.d/                       1154   0.0
VSC421 (VSC421Q) /CSM/VS/VSC4-A/VSC421Q.Seq.d/                       1154   0.0
VSH755 (VSH755Q) /CSM/VS/VSH7-C/VSH755Q.Seq.d/                       1138   0.0
VSG426 (VSG426Q) /CSM/VS/VSG4-B/VSG426Q.Seq.d/                       1136   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BQ621923|BQ621923.1 fch1c.pk002.k1 Conidiobolus cornatus ARSEF 512 Conidiobolus coronatus cDNA, mRNA sequence.    44  3e-07  3
T37896|T37896.1 EST103190 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 5' end, mRNA sequence.    36  0.20  2
X01099|X01099.1 Yeast first copy gene for ribosomal protein rp 28.    38  0.21  2
AL918374|AL918374.1 Danio rerio EST sequence, clone 047-C06-2.    48  0.24  1
Z74862|Z74862.1 S.cerevisiae chromosome XV reading frame ORF YOL120c.    38  0.27  2
X02635|X02635.1 Yeast first copy genes for ribosomal proteins rp28 and S16A (sce-1).    38  0.37  2
X95258|X95258.1 S.cerevisiae 10.6kbp fragment from chromosome XV.    38  1.2  2
BH166333|BH166333.1 ENTTD31TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38  1.8  2
U50858|U50858.1 Hepatitis C virus Middle Eastern patient 0547 putative nonstructural protein-5 gene, partial cds.    36  1.9  2
AC101275|AC101275.1 Mus musculus clone RP23-101M12, LOW-PASS SEQUENCE SAMPLING.    34  3.4  3
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54VZ4) RecName: Full=60S ribosomal protein L18;                     359   9e-98
AY857431_1(AY857431|pid:none) Suberites domuncula L18 mRNA, comp...   206   1e-51
EU116900_1(EU116900|pid:none) Barentsia elongata putative riboso...   206   1e-51
EU302542_1(EU302542|pid:none) Lineus viridis ribosomal protein r...   202   1e-50
(P35980) RecName: Full=60S ribosomal protein L18;  &AK009044_1(A...   202   2e-50
CP000589_288(CP000589|pid:none) Ostreococcus lucimarinus CCE9901...   201   5e-50
(P69090) RecName: Full=60S ribosomal protein L18;  &(P69091) Rec...   200   9e-50
(Q5E973) RecName: Full=60S ribosomal protein L18;  &BC104507_1(B...   199   1e-49
BC053777_1(BC053777|pid:none) Xenopus laevis major, mRNA (cDNA c...   198   3e-49
BC082960_1(BC082960|pid:none) Xenopus tropicalis ribosomal prote...   198   3e-49
protein update 2009. 7.29
PSORT 

 psg: 0.41  gvh: 0.40  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.67  mip: 0.13
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: endoplasmic reticulum

>> prediction for VSD156 is mit
5' end seq. ID VSD156F
5' end seq. 
>VSD156F.Seq
CAAATACACAATGGCCATCGATAAATCCAAAAGATTCTTAAGAAAGACCGGTAGAAAGAC
TTTAGTCTCTCAAAATCCATACCATGCACTCTTAGTCAAATTATACCGTTTCTTAGCCCG
TAGAACCAACTCCAAGTTCAACAAGGTTGTCTTAAAGAGATTATTACAAACTAAAACCAA
TAGACCACCAGTTTCAATCTCAAGAATTGCCAATTTAATGAAGGACAGAAAGAGCGGTAA
GATTGCTGTTTGTGTTGGTACCGTTGTTGATGATGAAAGATTATTAGACTGCCCAAAACT
CACTGTTTGTGCATTAAGATTCACTGAAACTGCTCGTTCAAGAATCGTCAAAGCTGGTGG
TAAAGCATTATCTTTCGATCAATTCGCTTTAGTTAGACCAAGAGGTAACAACACTTTCTT
AATCAAAGGTGTTACCAAAGCTAGAGAAGTCTACAAACATTTCGGTAGAGCTCCAGGTTT
ACCAGGTTCCCATGCTCGTCC----------
Length of 5' end seq. 501
3' end seq. ID VSD156Z
3' end seq. 
>VSD156Z.Seq
----------CCACGCGTCCCGCAAATACACAATGGCCATCGATAAATCCAAAAGATTCT
TAAGAAAGACCGGTAGAAAGACTTTAGTCTCTCAAAATCCATACCATGCACTCTTAGTCA
AATTATACCGTTTCTTAGCCCGTAGAACCAACTCCAAGTTCAACAAGGTTGTCTTAAAGA
GATTATTACAAACTAAAACCAATAGACCACCAGTTTCAATCTCAAGAATTGCCAATTTAA
TGAAGGACAGAAAGAGCGGTAAGATTGCTGTTTGTGTTGGTACCGTTGTTGATGATGAAA
GATTATTAGACTGCCCAAAACTCACTGTTTGTGCATTAAGATTCACTGAAACTGCTCGTT
CAAGAATCGTCAAAGCTGGTGGTAAAGCATTATCTTTCGATCAATTCGCTTTAGTTAGAC
CAAGAGGTAACAACACTTTCTTAATCAAAGGTGTTACCAAAGCTAGAGAAGTCTACAAAC
ATTTCGGTAGAGCTCCAGGTTTACCAGGTTCCCATGCTCGTCCTTATGTCCGTTCAGAAG
GTATTAAATTCCAAAGATCAAAGACCAGAAATCCATAAAGGCAAAAAGNAAAATAAAGTC
GCCCATTAAAAA
Length of 3' end seq. 602
Connected seq. ID VSD156P
Connected seq. 
>VSD156P.Seq
CAAATACACAATGGCCATCGATAAATCCAAAAGATTCTTAAGAAAGACCGGTAGAAAGAC
TTTAGTCTCTCAAAATCCATACCATGCACTCTTAGTCAAATTATACCGTTTCTTAGCCCG
TAGAACCAACTCCAAGTTCAACAAGGTTGTCTTAAAGAGATTATTACAAACTAAAACCAA
TAGACCACCAGTTTCAATCTCAAGAATTGCCAATTTAATGAAGGACAGAAAGAGCGGTAA
GATTGCTGTTTGTGTTGGTACCGTTGTTGATGATGAAAGATTATTAGACTGCCCAAAACT
CACTGTTTGTGCATTAAGATTCACTGAAACTGCTCGTTCAAGAATCGTCAAAGCTGGTGG
TAAAGCATTATCTTTCGATCAATTCGCTTTAGTTAGACCAAGAGGTAACAACACTTTCTT
AATCAAAGGTGTTACCAAAGCTAGAGAAGTCTACAAACATTTCGGTAGAGCTCCAGGTTT
ACCAGGTTCCCATGCTCGTCC----------CCACGCGTCCCGCAAATACACAATGGCCA
TCGATAAATCCAAAAGATTCTTAAGAAAGACCGGTAGAAAGACTTTAGTCTCTCAAAATC
CATACCATGCACTCTTAGTCAAATTATACCGTTTCTTAGCCCGTAGAACCAACTCCAAGT
TCAACAAGGTTGTCTTAAAGAGATTATTACAAACTAAAACCAATAGACCACCAGTTTCAA
TCTCAAGAATTGCCAATTTAATGAAGGACAGAAAGAGCGGTAAGATTGCTGTTTGTGTTG
GTACCGTTGTTGATGATGAAAGATTATTAGACTGCCCAAAACTCACTGTTTGTGCATTAA
GATTCACTGAAACTGCTCGTTCAAGAATCGTCAAAGCTGGTGGTAAAGCATTATCTTTCG
ATCAATTCGCTTTAGTTAGACCAAGAGGTAACAACACTTTCTTAATCAAAGGTGTTACCA
AAGCTAGAGAAGTCTACAAACATTTCGGTAGAGCTCCAGGTTTACCAGGTTCCCATGCTC
GTCCTTATGTCCGTTCAGAAGGTATTAAATTCCAAAGATCAAAGACCAGAAATCCATAAA
GGCAAAAAGNAAAATAAAGTCGCCCATTAAAAA
Length of connected seq. 1103
Full length Seq ID -
Full length Seq. -
Length of full length seq. -