NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA302
Library AH
(Link to library)
Clone ID AHA302
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15685-1
Original site URL
Representative seq. ID AHA302P
(Link to Original site)
Representative DNA sequence 
>AHA302 (AHA302Q) /CSM/AH/AHA3-A/AHA302Q.Seq.d/
TGGCCTACTGGAAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTC
ATATCACATTATNGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACNCTCT
ATCATTTAATTTTAATAAAAAAAAAAXXXXXXXXXXTGGTCAAGGTGCTGTTCAAACCGC
TCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCAT
GAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACA
TGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTT
TGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTC
TTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGA
ACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGG
TGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
gllekknreysyiyntqknsyhixvfh*FINNNIYIINXLSFNFNKKK---

---GQGAVQTALLFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGH
HGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVER
GNPFLAFVGFGAWLGASVAVLLLME
Translated Amino Acid sequence (All Frames) 
Frame A:
wptgkkk*ri*lyi*htkkfishyxfsliykq*yiynkxsii*f**kk---

---wsrccsnrslilgshfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhws
sr*ri*ng*slcssshsyhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrt
w*silgfrwfwclvrclccctftyg

Frame B:
gllekknreysyiyntqknsyhixvfh*FINNNIYIINXLSFNFNKKK---

---GQGAVQTALLFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGH
HGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVER
GNPFLAFVGFGAWLGASVAVLLLME

Frame C:
aywkkkieniviyithkkihitlxffinl*tiiyi**tlyhlilikkk---

---vkvlfkplsyswlsfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlvi
tvknlkwvkslfiksfipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksnv
vihswlslvlvlg*vplllyfylwn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ150 (VHQ150Q) /CSM/VH/VHQ1-C/VHQ150Q.Seq.d/                        848   0.0
VHP711 (VHP711Q) /CSM/VH/VHP7-A/VHP711Q.Seq.d/                        848   0.0
VHN341 (VHN341Q) /CSM/VH/VHN3-B/VHN341Q.Seq.d/                        848   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                        848   0.0
VHG103 (VHG103Q) /CSM/VH/VHG1-A/VHG103Q.Seq.d/                        848   0.0
SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/                        848   0.0
SHK862 (SHK862Q) /CSM/SH/SHK8-C/SHK862Q.Seq.d/                        848   0.0
SHK527 (SHK527Q) /CSM/SH/SHK5-B/SHK527Q.Seq.d/                        848   0.0
SHJ856 (SHJ856Q) /CSM/SH/SHJ8-C/SHJ856Q.Seq.d/                        848   0.0
SHJ838 (SHJ838Q) /CSM/SH/SHJ8-B/SHJ838Q.Seq.d/                        848   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.   848   0.0    2
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   4e-11  1
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   4e-11  1
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   1e-08  1
BQ403487|BQ403487.1 GA__Ed0059H07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0059H07f, mRNA sequence.    72   1e-08  1
BQ408812|BQ408812.1 GA__Ed0012A07r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0012A07r, mRNA sequence.    72   1e-08  1
AL031744|AL031744.8 Plasmodium falciparum DNA from MAL1P1.         38   1e-07  10
AJ438978|AJ438978.1 Mesembryanthemum crystallinum mRNA for putative vacuolar ATPase  subunit 100 kDa subunit (vpha-a gene).    46   6e-07  2
BM301463|BM301463.1 MCR046C02_25968 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment prescreened for removal of highly abundant transcripts Mesembryanthemum crystallinum cDNA clone MCR046C02 5, mRNA sequence.    46   7e-07  2
CA835808|CA835808.1 MCS004C09_161124 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, Crassulacean acid metabolism, phase I (2 AM). Mesembryanthemum crystallinum cDNA clone MCS004C09 5, mRNA sequence.    46   7e-07  2
dna update 2004. 2.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   286   4e-76
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   286   4e-76
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   144   2e-33
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   141   1e-32
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   141   1e-32
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   141   1e-32
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   140   2e-32
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   139   4e-32
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   139   5e-32
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05...   133   4e-30
protein update 2009. 4.26
PSORT 

 psg: 0.84  gvh: 0.62  alm: 0.18  top: 0.50  tms: 0.20  mit: 0.31  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for AHA302 is mit
5' end seq. ID AHA302F
5' end seq. 
>AHA302F.Seq
TGGCCTACTGGAAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTC
ATATCACATTATNGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACNCTCT
ATCATTTAATTTTAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 156
3' end seq. ID AHA302Z
3' end seq. 
>AHA302Z.Seq
NNNNNNNNNNTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCCA
TTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCG
AAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTC
ATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCG
AGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCAT
TGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAAC
GTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTG
TACTTTTACTTATGGAAT
Length of 3' end seq. 438
Connected seq. ID AHA302P
Connected seq. 
>AHA302P.Seq
TGGCCTACTGGAAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTC
ATATCACATTATNGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACNCTCT
ATCATTTAATTTTAATAAAAAAAAAA----------TGGTCAAGGTGCTGTTCAAACCGC
TCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCAT
GAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACA
TGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTT
TGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTC
TTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGA
ACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGG
TGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAAT
Length of connected seq. 574
Full length Seq ID -
Full length Seq. -
Length of full length seq. -