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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD146
Library VS
(Link to library)
Clone ID VSD146
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15133-1
Original site URL
Representative seq. ID VSD146Z
(Link to Original site)
Representative DNA sequence 
>VSD146 (VSD146Q) /CSM/VS/VSD1-B/VSD146Q.Seq.d/
XXXXXXXXXXACAGAAACAGATAATAAAATGAACTCATCATTACAAATCTCAAAGAAAAG
AAAGTTCGTCGCCGATGGTGTCTTCCACGCTGAACTCAATGAATTGTTCACTCGTGAATT
CAACAAAGATGAAGGTTACTCAGGTGTTGAATTAAAAACCTCACCAGGTTTAACTGAAAT
CATCATCCGTGCTTCAAAGACCCAAGCTGTTGTTGGTCCAAACGCTCGTCGTATCCAAGA
ACTCTGCTCTTTAGTCCAAAAGAGATTCAACTTCAAAGAAGGTACCGTCGTTCTCTTTTG
CTGAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
---ETDNKMNSSLQISKKRKFVADGVFHAELNELFTREFNKDEGYSGVELKTSPGLTEII
IRASKTQAVVGPNARRIQELCSLVQKRFNFKEGTVVLFC*k
Translated Amino Acid sequence (All Frames) 
Frame A:
---qkqiik*thhyksqrkessspmvsstlnsmncslvnstkmkvtqvln*kphqv*lks
ssvlqrpklllvqtlvvsknsal*skrdstskkvpsfsfaek


Frame B:
---rnr**neliitnlkekkvrrrwclpr*tq*ivhs*iqqr*rllrc*iknltrfn*nh
hpcfkdpsccwskrssyprtllfspkeiqlqrryrrslllk


Frame C:
---ETDNKMNSSLQISKKRKFVADGVFHAELNELFTREFNKDEGYSGVELKTSPGLTEII
IRASKTQAVVGPNARRIQELCSLVQKRFNFKEGTVVLFC*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD146 (VSD146Q) /CSM/VS/VSD1-B/VSD146Q.Seq.d/                        591   e-168
FC-BD04 (FC-BD04Q) /CSM/FC/FC-BD/FC-BD04Q.Seq.d/                      563   e-160
VSJ757 (VSJ757Q) /CSM/VS/VSJ7-C/VSJ757Q.Seq.d/                        555   e-157
VSH778 (VSH778Q) /CSM/VS/VSH7-D/VSH778Q.Seq.d/                        551   e-156
FC-AM05 (FC-AM05Q) /CSM/FC/FC-AM/FC-AM05Q.Seq.d/                      551   e-156
VSG446 (VSG446Q) /CSM/VS/VSG4-B/VSG446Q.Seq.d/                        537   e-152
VSI723 (VSI723Q) /CSM/VS/VSI7-A/VSI723Q.Seq.d/                        535   e-151
VSD711 (VSD711Q) /CSM/VS/VSD7-A/VSD711Q.Seq.d/                        533   e-151
VSE880 (VSE880Q) /CSM/VS/VSE8-D/VSE880Q.Seq.d/                        531   e-150
VSD464 (VSD464Q) /CSM/VS/VSD4-C/VSD464Q.Seq.d/                        517   e-146
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U78756|U78756.1 Dictyostelium discoideum RpgG (rpgG) mRNA, complete cds.   541  e-150  2
CD432040|CD432040.1 ETH1_12_A11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_12_A11_A002 5', mRNA sequence.    64  3e-09  2
D25285|D25285.1 Yeast mRNA for ribosomal protein YS3, complete cds.    52  3e-09  3
AX073126|AX073126.1 Sequence 237 from Patent WO0102550.           52  8e-09  3
CD431697|CD431697.1 ETH1_10_D05.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_10_D05_A002 5', mRNA sequence.    62  1e-08  2
U34347|U34347.1 Saccharomyces cerevisiae ribosomal protein S3 (RPS3) gene, complete cds.    52  3e-08  3
Z71454|Z71454.1 S.cerevisiae chromosome XIV reading frame ORF YNL178w.    52  3e-08  3
T44476|T44476.1 7739 Lambda-PRL2 Arabidopsis thaliana cDNA clone 125K10T7, mRNA sequence.    60  1e-07  2
CB258742|CB258742.1 16-E012734-014-002-P19-T7R MPIZ-ADIS-014 Arabidopsis thaliana cDNA clone MPIZp771P192Q 5-PRIME, mRNA sequence.    60  1e-07  2
CB264381|CB264381.1 66-E014658-035-002-C17-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000C172Q 5-PRIME, mRNA sequence.    60  1e-07  2
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P90526) RecName: Full=40S ribosomal protein S3;  &U78756_1(U787...   178   6e-44
EF083819_1(EF083819|pid:none) Picea sitchensis clone WS02713_L17...   111   7e-24
EU116878_1(EU116878|pid:none) Sipunculus nudus putative ribosoma...   110   1e-23
EF084684_1(EF084684|pid:none) Picea sitchensis clone WS02725_K04...   110   2e-23
BT036560_1(BT036560|pid:none) Zea mays full-length cDNA clone ZM...   110   2e-23
FB901923_1(FB901923|pid:none) Sequence 121196 from Patent WO2008...   110   2e-23
DQ122868_1(DQ122868|pid:none) Chlamydomonas incerta 40S ribosoma...   109   3e-23
CR382124_339(CR382124|pid:none) Kluyveromyces lactis strain NRRL...   108   5e-23
AC079038_19(AC079038|pid:none) Oryza sativa chromosome 7 clone O...   108   5e-23
CR380956_482(CR380956|pid:none) Candida glabrata strain CBS138 c...   108   6e-23
protein update 2009. 7.29
PSORT 

 psg: 0.75  gvh: 0.28  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSD146 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSD146Z
3' end seq. 
>VSD146Z.Seq
----------ACAGAAACAGATAATAAAATGAACTCATCATTACAAATCTCAAAGAAAAG
AAAGTTCGTCGCCGATGGTGTCTTCCACGCTGAACTCAATGAATTGTTCACTCGTGAATT
CAACAAAGATGAAGGTTACTCAGGTGTTGAATTAAAAACCTCACCAGGTTTAACTGAAAT
CATCATCCGTGCTTCAAAGACCCAAGCTGTTGTTGGTCCAAACGCTCGTCGTATCCAAGA
ACTCTGCTCTTTAGTCCAAAAGAGATTCAACTTCAAAGAAGGTACCGTCGTTCTCTTTTG
CTGAAAAA
Length of 3' end seq. 298
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -