NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD137
Library VS
(Link to library)
Clone ID VSD137
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12366-1
Original site URL
Representative seq. ID VSD137P
(Link to Original site)
Representative DNA sequence 
>VSD137 (VSD137Q) /CSM/VS/VSD1-B/VSD137Q.Seq.d/
AAAATGAACACAGCTGCTACTGAAACCGTTCAATTAGCCAAAGTTACCGAAGTACTCTGC
CGTACTGGTTCCCGTGGTGCCGTCACTCAAGTCCGTGTTGAGTTTTTAGGTACTGCCCAA
GGTAAAGAAAGAACTTTATTAAGAAACGTTAAAGGTCCAGTCAGAAAAGACGATATCTTA
TGTTTACTCGAAACTGAACGTGAAGCTCGTAGACTCCGTTAAGCACTTTTTATTATTATT
TTTTAAATAAAAGACGTTATAATATATAAAAAAAAGCTATTTTATTTTTAAAATAAAAAA
AAAAXXXXXXXXXXAAAATGAACACAGCTGCTACTGAAACCGTTCAATTAGCCAAAGTTA
CCGAAGTACTCTGCCGTACTGGTTCCCGTGGTGCCGTCACTCAAGTCCGTGTTGAGTTTT
TAGGTACTGCCCAAGGTAAAGAAAGAACTTTATTAAGAAACGTTAAAGGTCCAGTCAGAA
AAGACGATATCTTATGTTTACTCGAAACTGAACGTGAAGCTCGTAGACTCCGTTAAGCAC
TTTTTATTATTATTTTTTAAATAAAAGACGTTATAATATATAAAAAAAAGCTATTT
sequence update 2001. 3.22
Translated Amino Acid sequence 
k*tqlllkpfn*pklpkysavlvpvvpslksvlsf*vlpkvkkely*etlkvqsektisy
vysklnvklvdsvkhflllffk*ktl*YIKKSYFIFKIKKK---

---KMNTAATETVQLAKVTEVLCRTGSRGAVTQVRVEFLGTAQGKERTLLRNVKGPVRKD
DILCLLETEREARRLR*alfiiif*ikdviiykkklf
Translated Amino Acid sequence (All Frames) 
Frame A:
kmntaatetvqlakvtevlcrtgsrgavtqvrveflgtaqgkertllrnvkgpvrkddil
clleterearrlr*alfiiif*ikdviiykkklfyf*nkkk---

---KMNTAATETVQLAKVTEVLCRTGSRGAVTQVRVEFLGTAQGKERTLLRNVKGPVRKD
DILCLLETEREARRLR*alfiiif*ikdviiykkklf

Frame B:
k*tqlllkpfn*pklpkysavlvpvvpslksvlsf*vlpkvkkely*etlkvqsektisy
vysklnvklvdsvkhflllffk*ktl*YIKKSYFIFKIKKK---

---k*tqlllkpfn*pklpkysavlvpvvpslksvlsf*vlpkvkkely*etlkvqsekt
isyvysklnvklvdsvkhflllffk*ktl*yikksy

Frame C:
nehscy*nrsisqsyrstlpywfpwcrhsspc*vfrycpr*rknfikkr*rssqkrrylm
ftrn*t*ss*tplstfyyyflnkrryni*kkailflk*kk---

---nehscy*nrsisqsyrstlpywfpwcrhsspc*vfrycpr*rknfikkr*rssqkrr
ylmftrn*t*ss*tplstfyyyflnkrryni*kkai
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG789 (VSG789Q) /CSM/VS/VSG7-D/VSG789Q.Seq.d/                        535   e-151
VSE776 (VSE776Q) /CSM/VS/VSE7-D/VSE776Q.Seq.d/                        535   e-151
VSD137 (VSD137Q) /CSM/VS/VSD1-B/VSD137Q.Seq.d/                        535   e-151
SSJ523 (SSJ523Q) /CSM/SS/SSJ5-A/SSJ523Q.Seq.d/                        535   e-151
VSJ711 (VSJ711Q) /CSM/VS/VSJ7-A/VSJ711Q.Seq.d/                        533   e-150
VSE356 (VSE356Q) /CSM/VS/VSE3-C/VSE356Q.Seq.d/                        533   e-150
SSK592 (SSK592Q) /CSM/SS/SSK5-D/SSK592Q.Seq.d/                        533   e-150
VSD119 (VSD119Q) /CSM/VS/VSD1-A/VSD119Q.Seq.d/                        531   e-150
VSI849 (VSI849Q) /CSM/VS/VSI8-C/VSI849Q.Seq.d/                        529   e-149
VSF179 (VSF179Q) /CSM/VS/VSF1-D/VSF179Q.Seq.d/                        529   e-149
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    62  8e-16  7
X69583|X69583.1 K.marxianus gene for ribosomal protein S33.       40  1e-05  3
AI433542|AI433542.1 ti69g09.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE:2137312 3' similar to contains element MER4 MER4 repetitive element ;, mRNA sequence.    40  4e-05  2
BF436577|BF436577.1 7p07h04.x1 NCI_CGAP_Ov18 Homo sapiens cDNA clone IMAGE:3645175 3' similar to contains Alu repetitive element;, mRNA sequence.    40  6e-05  2
W61144|W61144.1 zd31c01.s1 Soares_fetal_heart_NbHH19W Homo sapiens cDNA clone IMAGE:342240 3', mRNA sequence.    40  8e-05  2
AA808323|AA808323.1 oc41h10.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGE:1352323 3', mRNA sequence.    40  9e-05  2
BG601370|BG601370.1 EST500460 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDB51, mRNA sequence.    42  1e-04  2
AI141457|AI141457.1 qa67d06.x1 Soares_fetal_heart_NbHH19W Homo sapiens cDNA clone IMAGE:1691819 3', mRNA sequence.    40  1e-04  2
N51524|N51524.1 yy97c07.s1 Soares_multiple_sclerosis_2NbHMSP Homo sapiens cDNA clone IMAGE:281484 3', mRNA sequence.    40  1e-04  2
AA043817|AA043817.1 zk59f11.s1 Soares_pregnant_uterus_NbHPU Homo sapiens cDNA clone IMAGE:487149 3', mRNA sequence.    40  1e-04  2
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MZ5) RecName: Full=40S ribosomal protein S28;                     126   4e-28
CR940352_397(CR940352|pid:none) Theileria annulata strain Ankara...    75   1e-12
CR382129_187(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    74   3e-12
CP000496_1031(CP000496|pid:none) Pichia stipitis CBS 6054 chromo...    73   5e-12
AM920436_883(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    73   5e-12
CR382136_616(CR382136|pid:none) Debaryomyces hansenii strain CBS...    73   7e-12
AM270298_36(AM270298|pid:none) Aspergillus niger contig An13c004...    72   2e-11
(Q10421) RecName: Full=40S ribosomal protein S28; AltName: Full=...    69   8e-11
CU633456_12(CU633456|pid:none) Podospora anserina genomic DNA ch...    69   8e-11
AE014187_583(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    69   1e-10
protein update 2009. 7.29
PSORT 

 psg: 0.42  gvh: 0.44  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.23  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: mitochondrial

>> prediction for VSD137 is nuc
5' end seq. ID VSD137F
5' end seq. 
>VSD137F.Seq
AAAATGAACACAGCTGCTACTGAAACCGTTCAATTAGCCAAAGTTACCGAAGTACTCTGC
CGTACTGGTTCCCGTGGTGCCGTCACTCAAGTCCGTGTTGAGTTTTTAGGTACTGCCCAA
GGTAAAGAAAGAACTTTATTAAGAAACGTTAAAGGTCCAGTCAGAAAAGACGATATCTTA
TGTTTACTCGAAACTGAACGTGAAGCTCGTAGACTCCGTTAAGCACTTTTTATTATTATT
TTTTAAATAAAAGACGTTATAATATATAAAAAAAAGCTATTTTATTTTTAAAATAAAAAA
AAAA----------
Length of 5' end seq. 304
3' end seq. ID VSD137Z
3' end seq. 
>VSD137Z.Seq
----------AAAATGAACACAGCTGCTACTGAAACCGTTCAATTAGCCAAAGTTACCGA
AGTACTCTGCCGTACTGGTTCCCGTGGTGCCGTCACTCAAGTCCGTGTTGAGTTTTTAGG
TACTGCCCAAGGTAAAGAAAGAACTTTATTAAGAAACGTTAAAGGTCCAGTCAGAAAAGA
CGATATCTTATGTTTACTCGAAACTGAACGTGAAGCTCGTAGACTCCGTTAAGCACTTTT
TATTATTATTTTTTAAATAAAAGACGTTATAATATATAAAAAAAAGCTATTT
Length of 3' end seq. 282
Connected seq. ID VSD137P
Connected seq. 
>VSD137P.Seq
AAAATGAACACAGCTGCTACTGAAACCGTTCAATTAGCCAAAGTTACCGAAGTACTCTGC
CGTACTGGTTCCCGTGGTGCCGTCACTCAAGTCCGTGTTGAGTTTTTAGGTACTGCCCAA
GGTAAAGAAAGAACTTTATTAAGAAACGTTAAAGGTCCAGTCAGAAAAGACGATATCTTA
TGTTTACTCGAAACTGAACGTGAAGCTCGTAGACTCCGTTAAGCACTTTTTATTATTATT
TTTTAAATAAAAGACGTTATAATATATAAAAAAAAGCTATTTTATTTTTAAAATAAAAAA
AAAA----------AAAATGAACACAGCTGCTACTGAAACCGTTCAATTAGCCAAAGTTA
CCGAAGTACTCTGCCGTACTGGTTCCCGTGGTGCCGTCACTCAAGTCCGTGTTGAGTTTT
TAGGTACTGCCCAAGGTAAAGAAAGAACTTTATTAAGAAACGTTAAAGGTCCAGTCAGAA
AAGACGATATCTTATGTTTACTCGAAACTGAACGTGAAGCTCGTAGACTCCGTTAAGCAC
TTTTTATTATTATTTTTTAAATAAAAGACGTTATAATATATAAAAAAAAGCTATTT
Length of connected seq. 586
Full length Seq ID -
Full length Seq. -
Length of full length seq. -