VSD133
Library VS
(Link to library)
Clone ID VSD133
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13591-1
Original site URL
Representative seq. ID VSD133P
(Link to Original site)
Representative DNA sequence
>VSD133 (VSD133Q) /CSM/VS/VSD1-B/VSD133Q.Seq.d/
ATTTGTAATACTAGTGATAATGCAAATTTCAATTTTGAAGCTCTCCTTTAAAATTAATGA
AAAAAATAAAAATAAAAATAAAAAAAGATAATAGAAAATAGTATTCTCTCTTTTTCTAAT
TTTATATAATAAAAAAAAAAXXXXXXXXXXATTCAAATCAATTTGTAATACTAGTGATAA
TGCAAATTTCAATTTTGAAGCTCTCCTTTAAAATTAATGAAAAAAATAAAAATAAAAATA
AAAAAAGATAATAGAAAATAGTATTC
sequence update 2001. 3.22
Translated Amino Acid sequence
fvilvimqisilklsfkineknknknkkr**KIVFSLFLILYNKKK---

---SNQFVILVIMQISILKLSFKINEKNKNKNKKR**kivf


Translated Amino Acid sequence (All Frames)
Frame A:
icntsdnanfnfeall*n**kk*k*k*kkiiensilsfsnfi**kk---

---iqinl*y***ckfqf*ssplklmkkikikikkdnrk*y

Frame B:
fvilvimqisilklsfkineknknknkkr**KIVFSLFLILYNKKK---

---fksicntsdnanfnfeall*n**kk*k*k*kkiiensi

Frame C:
l*y***ckfqf*ssplklmkkikikikkdnrk*yslff*fyiikkk---

---SNQFVILVIMQISILKLSFKINEKNKNKNKKR**kivf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD133 (VSD133Q) /CSM/VS/VSD1-B/VSD133Q.Seq.d/ 137 9e-32
VSC519 (VSC519Q) /CSM/VS/VSC5-A/VSC519Q.Seq.d/ 137 9e-32
VSA563 (VSA563Q) /CSM/VS/VSA5-C/VSA563Q.Seq.d/ 137 9e-32
VHN245 (VHN245Q) /CSM/VH/VHN2-B/VHN245Q.Seq.d/ 137 9e-32
VHF767 (VHF767Q) /CSM/VH/VHF7-C/VHF767Q.Seq.d/ 137 9e-32
FC-IC1506 (FC-IC1506Q) /CSM/FC-IC/FC-IC1506Q.Seq.d/ 137 9e-32
VHO774 (VHO774Q) /CSM/VH/VHO7-D/VHO774Q.Seq.d/ 135 4e-31
VHM447 (VHM447Q) /CSM/VH/VHM4-B/VHM447Q.Seq.d/ 135 4e-31
VHH260 (VHH260Q) /CSM/VH/VHH2-C/VHH260Q.Seq.d/ 135 4e-31
VHG849 (VHG849Q) /CSM/VH/VHG8-C/VHG849Q.Seq.d/ 135 4e-31

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC067731|AC067731.9 Homo sapiens chromosome 3 clone RP11-432I21, WORKING DRAFT SEQUENCE, 20 unordered pieces. 40 0.36 3
CC064933|CC064933.1 fgma004f004c05f0 fgma filtered library (LibID: 145) Glycine max genomic clone fgma004f004c05, DNA sequence. 40 0.58 2
AC146070|AC146070.1 Pan troglodytes chromosome UNK clone RP43-61A11, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces. 44 0.83 1
BH608109|BH608109.1 BOHQM80TR BOHQ Brassica oleracea genomic clone BOHQM80, DNA sequence. 32 1.2 2
BH586227|BH586227.1 BOHCZ57TR BOHC Brassica oleracea genomic clone BOHCZ57, DNA sequence. 32 1.3 2
AC097845|AC097845.7 Rattus norvegicus clone CH230-172G12, WORKING DRAFT SEQUENCE, 1 ordered piece. 42 3.3 1
AC134370|AC134370.2 Rattus norvegicus clone CH230-125G4, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 42 3.3 1
AC128767|AC128767.3 Rattus norvegicus clone CH230-446I21, WORKING DRAFT SEQUENCE, 1 ordered piece. 42 3.3 1
AC129440|AC129440.3 Rattus norvegicus clone CH230-112K14, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces. 42 3.3 1
AC139662|AC139662.5 Homo sapiens clone RP13-563K9, WORKING DRAFT SEQUENCE, 3 unordered pieces. 42 3.3 1
dna update 2003. 8.21
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 189,406,809
protein update 2009. 7.29
PSORT

psg: 0.99 gvh: 0.35 alm: 0.29 top: 0.53 tms: 0.07 mit: 0.34 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.25 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

40.0 %: mitochondrial
16.0 %: cytoplasmic
16.0 %: nuclear
12.0 %: Golgi
12.0 %: endoplasmic reticulum
4.0 %: plasma membrane

>> prediction for VSD133 is mit

5' end seq. ID VSD133F
5' end seq.
>VSD133F.Seq
ATTTGTAATACTAGTGATAATGCAAATTTCAATTTTGAAGCTCTCCTTTAAAATTAATGA
AAAAAATAAAAATAAAAATAAAAAAAGATAATAGAAAATAGTATTCTCTCTTTTTCTAAT
TTTATATAATAAAAAAAAAA----------
Length of 5' end seq. 140
3' end seq. ID VSD133Z
3' end seq.
>VSD133Z.Seq
----------ATTCAAATCAATTTGTAATACTAGTGATAATGCAAATTTCAATTTTGAAG
CTCTCCTTTAAAATTAATGAAAAAAATAAAAATAAAAATAAAAAAAGATAATAGAAAATA
GTATTC
Length of 3' end seq. 116
Connected seq. ID VSD133P
Connected seq.
>VSD133P.Seq
ATTTGTAATACTAGTGATAATGCAAATTTCAATTTTGAAGCTCTCCTTTAAAATTAATGA
AAAAAATAAAAATAAAAATAAAAAAAGATAATAGAAAATAGTATTCTCTCTTTTTCTAAT
TTTATATAATAAAAAAAAAA----------ATTCAAATCAATTTGTAATACTAGTGATAA
TGCAAATTTCAATTTTGAAGCTCTCCTTTAAAATTAATGAAAAAAATAAAAATAAAAATA
AAAAAAGATAATAGAAAATAGTATTC
Length of connected seq. 256
Full length Seq ID -
Full length Seq. -
Length of full length seq. -