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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD109
Library VS
(Link to library)
Clone ID VSD109
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSD109P
(Link to Original site)
Representative DNA sequence 
>VSD109 (VSD109Q) /CSM/VS/VSD1-A/VSD109Q.Seq.d/
ATCTAACTACAGTAAGACCTCTCACACTCCACGTCGTCCATTCGAAAAGGAAAGAATCGA
CGCTGAATTAAAAGTTGTCGGTGAATTTGGTTTAAAGAACAAAAACGAAGTATGGAGAGT
CCAATACGCTTTAGCCAAAATCAGAAAGGCTGCTAGAGAACTCCTCGTTCTTGATGAAAA
AGACCCAAAACGTATCTTTGAAGGTTCAGCTCTCCTCCGTAGACTCCACAAATTAGGTGT
CATGGAAGAATCAAAGAACAAACTCGATTATATTCTTAATCTTAAAGTTCAAGATTTCAT
GGAAAGACGTCTCCAAACTTTAGTCTTCAAAAATGGTCTTGCCAAATCAATCCATCACGC
TCGTGTTTTAATCAAAGGTAGACACATCCGTGTTGGTAAACAATTAGTCAACGTTCCATC
TTTCCTCGTCCGTGTTGAATCCCAAAAGCACTTAGGTTTAGCTTCAACCTCCCCATTAGC
TGGTGGTCGTCCAGGTCCGTCGTGCCCGTAAAATGGCCAAGAACAACTCATCAAAAGGTG
AAGAAGAAAACTAAATTAATAAAAATAACCATTATATTAGGAGAGTAAAAAAAAAAXXXX
XXXXXXATCTAACTACAGTAAGACCTCTCACACTCCACGTCGTCCATTCGAAAAGGAAAG
AATCGACGCTNAATTAAAAGTTGTCGGTGAATTTGGTTTAAAGAACAAAAACGAAGTATG
GAGAGTCCAATACGCTTTAGCCAAAATCAGAAAGGCTGCTAGAGAACTCCTCGTTCTTGA
TGAAAAAGACCCAAAACGTATCTTTGAAGGTTCAGCTCTCCTCCGTAGACTCCACAAATT
AGGTGTCATGGAAGAATCAAAGAACAAACTCGATTATATTCTTAATCTTAAAGTTCAAGA
TTTCATGGAAAGACGTCTCCAAACTTTAGTCTTCAAAAATGGTCTTGCCAAATCAATCCA
TCACGCTCGTGTTTTAATCAAAGGTAGACACATCCGTGTTGGTAAACAATTAGTCAACGT
TCCATCTTTCCTCGTCCGTGTTGAATCCCAAAAGCACTTAGGTTTAGCTTCAACCTCCCC
ATTAGCTGGTGGTCGTCCAGGTCGTCGTGCCCGTAAAAGGCCAAGAACAACTCATCAAAA
GGTAAGAAGAAAACTAAATTAATAAAAAAACCATTA
sequence update 2001. 3.22
Translated Amino Acid sequence 
lttvrpltlhvvhskrkestln*klsvnlv*rtktkygesntl*pkserllenssflmkk
tqnvslkvqlssvdstn*vswknqrtnsiiflilkfkiswkdvskl*sskmvlpnqsitl
vf*skvdtsvlvnn*stfhlsssvlnpkst*v*lqpph*lvvvqvrrarkmaknnsskge
een*INKNNHYIRRVKKK---

---SNYSKTSHTPRRPFEKERIDAXLKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVL
DEKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSI
HHARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARKRPRTTHQ
KVRRKLN**knh
Translated Amino Acid sequence (All Frames) 
Frame A:
i*lq*dlshstssirkgknrr*ikscr*iwfkeqkrsmespirfsqnqkgc*rtprs**k
rpktyl*rfsspp*tpqirchgrikeqtrlys*s*ssrfhgktspnfslqkwscqinpsr
scfnqr*thpcw*tisqrsifprpc*ipkalrfsfnlpiswwssrsvvpvkwprtthqkv
kkktklikitiilge*kk---

---i*lq*dlshstssirkgknrrxikscr*iwfkeqkrsmespirfsqnqkgc*rtprs
**krpktyl*rfsspp*tpqirchgrikeqtrlys*s*ssrfhgktspnfslqkwscqin
psrscfnqr*thpcw*tisqrsifprpc*ipkalrfsfnlpiswwssrsscp*kaknnss
kgkkktklikkpl

Frame B:
snysktshtprrpfekeridaelkvvgefglknknevwrvqyalakirkaarellvldek
dpkrifegsallrrlhklgvmeesknkldyilnlkvqdfmerrlqtlvfknglaksihha
rvlikgrhirvgkqlvnvpsflvrvesqkhlglastsplaggrpgpscp*ngqeqlikr*
rrkln**k*ply*eskkk---

---SNYSKTSHTPRRPFEKERIDAXLKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVL
DEKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSI
HHARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARKRPRTTHQ
KVRRKLN**knh

Frame C:
lttvrpltlhvvhskrkestln*klsvnlv*rtktkygesntl*pkserllenssflmkk
tqnvslkvqlssvdstn*vswknqrtnsiiflilkfkiswkdvskl*sskmvlpnqsitl
vf*skvdtsvlvnn*stfhlsssvlnpkst*v*lqpph*lvvvqvrrarkmaknnsskge
een*INKNNHYIRRVKKK---

---lttvrpltlhvvhskrkestln*klsvnlv*rtktkygesntl*pkserllenssfl
mkktqnvslkvqlssvdstn*vswknqrtnsiiflilkfkiswkdvskl*sskmvlpnqs
itlvf*skvdtsvlvnn*stfhlsssvlnpkst*v*lqpph*lvvvqvvvpvkgqeqlik
r*een*inkkti
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD109 (VSD109Q) /CSM/VS/VSD1-A/VSD109Q.Seq.d/                       1162   0.0
VHJ170 (VHJ170Q) /CSM/VH/VHJ1-C/VHJ170Q.Seq.d/                       1138   0.0
VSH713 (VSH713Q) /CSM/VS/VSH7-A/VSH713Q.Seq.d/                       1134   0.0
VHO354 (VHO354Q) /CSM/VH/VHO3-C/VHO354Q.Seq.d/                       1134   0.0
FC-AS15 (FC-AS15Q) /CSM/FC/FC-AS/FC-AS15Q.Seq.d/                     1126   0.0
VSF164 (VSF164Q) /CSM/VS/VSF1-C/VSF164Q.Seq.d/                       1114   0.0
FC-BO11 (FC-BO11Q) /CSM/FC/FC-BO/FC-BO11Q.Seq.d/                     1108   0.0
VSD823 (VSD823Q) /CSM/VS/VSD8-A/VSD823Q.Seq.d/                       1092   0.0
VFA445 (VFA445Q) /CSM/VF/VFA4-B/VFA445Q.Seq.d/                       1092   0.0
VSH205 (VSH205Q) /CSM/VS/VSH2-A/VSH205Q.Seq.d/                       1082   0.0
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X06636|X06636.1 Dictyostelium rp1024 gene for ribosomal protein 1024.   995  0.0  3
X15384|X15384.1 Dictyostelium discoideum mRNA for V12 gene.      646  0.0  3
AL111255|AL111255.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  2e-14  3
AL116249|AL116249.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  2e-14  3
AL116178|AL116178.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  2e-14  3
AL115920|AL115920.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  2e-14  3
AL115016|AL115016.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  2e-14  3
AL115391|AL115391.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  2e-14  3
AL115396|AL115396.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  2e-14  3
AL112836|AL112836.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  2e-14  3
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P14132) RecName: Full=40S ribosomal protein S9; AltName: Full=4...   325   2e-87
AY857466_1(AY857466|pid:none) Suberites domuncula S9 mRNA, compl...   248   4e-64
AP007167_255(AP007167|pid:none) Aspergillus oryzae RIB40 genomic...   247   5e-64
AY961563_1(AY961563|pid:none) Lysiphlebus testaceipes ribosomal ...   246   1e-63
AM270039_25(AM270039|pid:none) Aspergillus niger contig An02c045...   246   1e-63
(Q9LXG1) RecName: Full=40S ribosomal protein S9-1;  &AK228437_1(...   246   1e-63
AJ749993_1(AJ749993|pid:none) Catharanthus roseus mRNA for 40S r...   245   3e-63
CU633445_35(CU633445|pid:none) Podospora anserina genomic DNA ch...   245   3e-63
DQ630942_1(DQ630942|pid:none) Gryllus rubens S9 ribosomal protei...   245   3e-63
(Q9FLF0) RecName: Full=40S ribosomal protein S9-2;  &AB010077_2(...   245   3e-63
protein update 2009. 7.29
PSORT 

 psg: 0.46  gvh: 0.20  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.05
 nuc: 0.38  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: nuclear

>> prediction for VSD109 is cyt
5' end seq. ID VSD109F
5' end seq. 
>VSD109F.Seq
ATCTAACTACAGTAAGACCTCTCACACTCCACGTCGTCCATTCGAAAAGGAAAGAATCGA
CGCTGAATTAAAAGTTGTCGGTGAATTTGGTTTAAAGAACAAAAACGAAGTATGGAGAGT
CCAATACGCTTTAGCCAAAATCAGAAAGGCTGCTAGAGAACTCCTCGTTCTTGATGAAAA
AGACCCAAAACGTATCTTTGAAGGTTCAGCTCTCCTCCGTAGACTCCACAAATTAGGTGT
CATGGAAGAATCAAAGAACAAACTCGATTATATTCTTAATCTTAAAGTTCAAGATTTCAT
GGAAAGACGTCTCCAAACTTTAGTCTTCAAAAATGGTCTTGCCAAATCAATCCATCACGC
TCGTGTTTTAATCAAAGGTAGACACATCCGTGTTGGTAAACAATTAGTCAACGTTCCATC
TTTCCTCGTCCGTGTTGAATCCCAAAAGCACTTAGGTTTAGCTTCAACCTCCCCATTAGC
TGGTGGTCGTCCAGGTCCGTCGTGCCCGTAAAATGGCCAAGAACAACTCATCAAAAGGTG
AAGAAGAAAACTAAATTAATAAAAATAACCATTATATTAGGAGAGTAAAAAAAAAA----
------
Length of 5' end seq. 596
3' end seq. ID VSD109Z
3' end seq. 
>VSD109Z.Seq
----------ATCTAACTACAGTAAGACCTCTCACACTCCACGTCGTCCATTCGAAAAGG
AAAGAATCGACGCTNAATTAAAAGTTGTCGGTGAATTTGGTTTAAAGAACAAAAACGAAG
TATGGAGAGTCCAATACGCTTTAGCCAAAATCAGAAAGGCTGCTAGAGAACTCCTCGTTC
TTGATGAAAAAGACCCAAAACGTATCTTTGAAGGTTCAGCTCTCCTCCGTAGACTCCACA
AATTAGGTGTCATGGAAGAATCAAAGAACAAACTCGATTATATTCTTAATCTTAAAGTTC
AAGATTTCATGGAAAGACGTCTCCAAACTTTAGTCTTCAAAAATGGTCTTGCCAAATCAA
TCCATCACGCTCGTGTTTTAATCAAAGGTAGACACATCCGTGTTGGTAAACAATTAGTCA
ACGTTCCATCTTTCCTCGTCCGTGTTGAATCCCAAAAGCACTTAGGTTTAGCTTCAACCT
CCCCATTAGCTGGTGGTCGTCCAGGTCGTCGTGCCCGTAAAAGGCCAAGAACAACTCATC
AAAAGGTAAGAAGAAAACTAAATTAATAAAAAAACCATTA
Length of 3' end seq. 570
Connected seq. ID VSD109P
Connected seq. 
>VSD109P.Seq
ATCTAACTACAGTAAGACCTCTCACACTCCACGTCGTCCATTCGAAAAGGAAAGAATCGA
CGCTGAATTAAAAGTTGTCGGTGAATTTGGTTTAAAGAACAAAAACGAAGTATGGAGAGT
CCAATACGCTTTAGCCAAAATCAGAAAGGCTGCTAGAGAACTCCTCGTTCTTGATGAAAA
AGACCCAAAACGTATCTTTGAAGGTTCAGCTCTCCTCCGTAGACTCCACAAATTAGGTGT
CATGGAAGAATCAAAGAACAAACTCGATTATATTCTTAATCTTAAAGTTCAAGATTTCAT
GGAAAGACGTCTCCAAACTTTAGTCTTCAAAAATGGTCTTGCCAAATCAATCCATCACGC
TCGTGTTTTAATCAAAGGTAGACACATCCGTGTTGGTAAACAATTAGTCAACGTTCCATC
TTTCCTCGTCCGTGTTGAATCCCAAAAGCACTTAGGTTTAGCTTCAACCTCCCCATTAGC
TGGTGGTCGTCCAGGTCCGTCGTGCCCGTAAAATGGCCAAGAACAACTCATCAAAAGGTG
AAGAAGAAAACTAAATTAATAAAAATAACCATTATATTAGGAGAGTAAAAAAAAAA----
------ATCTAACTACAGTAAGACCTCTCACACTCCACGTCGTCCATTCGAAAAGGAAAG
AATCGACGCTNAATTAAAAGTTGTCGGTGAATTTGGTTTAAAGAACAAAAACGAAGTATG
GAGAGTCCAATACGCTTTAGCCAAAATCAGAAAGGCTGCTAGAGAACTCCTCGTTCTTGA
TGAAAAAGACCCAAAACGTATCTTTGAAGGTTCAGCTCTCCTCCGTAGACTCCACAAATT
AGGTGTCATGGAAGAATCAAAGAACAAACTCGATTATATTCTTAATCTTAAAGTTCAAGA
TTTCATGGAAAGACGTCTCCAAACTTTAGTCTTCAAAAATGGTCTTGCCAAATCAATCCA
TCACGCTCGTGTTTTAATCAAAGGTAGACACATCCGTGTTGGTAAACAATTAGTCAACGT
TCCATCTTTCCTCGTCCGTGTTGAATCCCAAAAGCACTTAGGTTTAGCTTCAACCTCCCC
ATTAGCTGGTGGTCGTCCAGGTCGTCGTGCCCGTAAAAGGCCAAGAACAACTCATCAAAA
GGTAAGAAGAAAACTAAATTAATAAAAAAACCATTA
Length of connected seq. 1166
Full length Seq ID -
Full length Seq. -
Length of full length seq. -