VSC875
Library VS
(Link to library)
Clone ID VSC875
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16231-1
Original site URL
Representative seq. ID VSC875E
(Link to Original site)
Representative DNA sequence
>VSC875 (VSC875Q) /CSM/VS/VSC8-D/VSC875Q.Seq.d/
CGAAAAAACTAAAGCTTTTGAACTCAGAACCAAAAACAAGACTCAATTACTTGAACACCT
CAAGGAACTCAGAACTGAGCTCTCAAGTTTAAGAGTTGCCCAAGTTAAATCACCAAACCC
AAGCAAATTAGCCAAAATCGGTACCGTCCGTAAAGCTATTGCCCGTGTTTTAACTGTTTT
CAACCAAACTCAAAAGAACCATCTCCGTGCTGTCTATTCTAAAAAATCATCAAGCAAGAT
CCCAACTGATCTCCGTTACAAAAAGACTAGAGCCATCAGAAGACGTTTCACCAACAAACA
ATCTAAAGTTGTCACCTTAAGAGTTTCCAAAACTGCCACCAACTTCCCACAAAGAGTTTT
CGCTGTTAAAGCCTAAATTTGCATTTAGATGATTTTAAAAAATAAAATATATTAA
sequence update 2000.10.12
Translated Amino Acid sequence
EKTKAFELRTKNKTQLLEHLKELRTELSSLRVAQVKSPNPSKLAKIGTVRKAIARVLTVF
NQTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRFTNKQSKVVTLRVSKTATNFPQRVF
AVKA*ici*milknkiy*


Translated Amino Acid sequence (All Frames)
Frame A:
rkn*sf*tqnqkqdsit*tpqgtqn*alkfkscps*itkpkqisqnryrp*sycpcfncf
qpnskepspcclf*kiikqdpn*splqkd*shqktfhqqti*schlksfqnchqlptksf
rc*slnlhlddfkk*nil


Frame B:
EKTKAFELRTKNKTQLLEHLKELRTELSSLRVAQVKSPNPSKLAKIGTVRKAIARVLTVF
NQTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRFTNKQSKVVTLRVSKTATNFPQRVF
AVKA*ici*milknkiy*


Frame C:
kklkllnsepktrlnylntsrnselssqv*elpklnhqtqan*pksvpsvkllpvf*lfs
tklkrtisvlsilknhqarsqlisvtkrlepsedvsptnnlklsp*efpklpptshkefs
llkpkfafr*f*kikyi


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSC875 (VSC875Q) /CSM/VS/VSC8-D/VSC875Q.Seq.d/ 823 0.0
VSA330 (VSA330Q) /CSM/VS/VSA3-B/VSA330Q.Seq.d/ 823 0.0
VSJ543 (VSJ543Q) /CSM/VS/VSJ5-B/VSJ543Q.Seq.d/ 815 0.0
VSJ336 (VSJ336Q) /CSM/VS/VSJ3-B/VSJ336Q.Seq.d/ 815 0.0
VSI395 (VSI395Q) /CSM/VS/VSI3-D/VSI395Q.Seq.d/ 815 0.0
VSH858 (VSH858Q) /CSM/VS/VSH8-C/VSH858Q.Seq.d/ 815 0.0
VSG811 (VSG811Q) /CSM/VS/VSG8-A/VSG811Q.Seq.d/ 815 0.0
VSD708 (VSD708Q) /CSM/VS/VSD7-A/VSD708Q.Seq.d/ 815 0.0
VSD254 (VSD254Q) /CSM/VS/VSD2-C/VSD254Q.Seq.d/ 815 0.0
VSC838 (VSC838Q) /CSM/VS/VSC8-B/VSC838Q.Seq.d/ 815 0.0

own update 2003. 7. 5
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL132954|AL132954.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T26I12. 46 0.024 2
AC108710|AC108710.3 Homo sapiens 3p BAC RP11-88I7 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 46 0.34 1
AC024890|AC024890.20 Homo sapiens 3 BAC RP11-389A20 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 46 0.34 1
AI996565|AI996565.1 701667462 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana cDNA clone 701667462, mRNA sequence. 46 0.34 1
CB264903|CB264903.1 24-E015021-035-004-O05-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000O054Q 5-PRIME, mRNA sequence. 46 0.34 1
AL084068|AL084068.1 Arabidopsis thaliana genome survey sequence T7 end of BAC F8C2 of IGF library from strain Columbia of Arabidopsis thaliana. 46 0.34 1
BT006384|BT006384.1 Arabidopsis thaliana At3g55170 gene, complete cds. 46 0.34 1
AU226410|AU226410.1 Arabidopsis thaliana cDNA clone:RAFL14-31-M09, 3'-end. 46 0.34 1
BZ223087|BZ223087.1 CH230-496G16.TVB CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-496G16, DNA sequence. 46 0.34 1
BE038964|BE038964.1 AB07H02 AB Arabidopsis thaliana cDNA 5' similar to ribosomal protein l35, mRNA sequence. 46 0.34 1
dna update 2003. 9.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017341_741(AE017341|pid:none) Cryptococcus neoformans var. neo... 126 2e-28
AF548325_1(AF548325|pid:none) Branchiostoma belcheri ribosomal p... 113 2e-24
EU958029_1(EU958029|pid:none) Zea mays clone 1664319 60S ribosom... 112 5e-24
AK059262_1(AK059262|pid:none) Oryza sativa Japonica Group cDNA c... 110 2e-23
BT053501_1(BT053501|pid:none) Medicago truncatula clone MTYFP_FQ... 109 3e-23
(P17078) RecName: Full=60S ribosomal protein L35; &(Q6ZWV7) Rec... 109 3e-23
AC149264_3(AC149264|pid:none) Medicago truncatula clone mth2-78f... 108 4e-23
EU959220_1(EU959220|pid:none) Zea mays clone 212376 60S ribosoma... 108 4e-23
(Q9M3D2) RecName: Full=60S ribosomal protein L35-3; &AK227739_1... 108 6e-23
(Q9LZ41) RecName: Full=60S ribosomal protein L35-4; &AK226248_1... 108 8e-23
protein update 2009. 7.29
PSORT

psg: 0.53 gvh: 0.45 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.19 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
40.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for VSC875 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSC875E
Full length Seq.
>VSC875E.Seq
CGAAAAAACTAAAGCTTTTGAACTCAGAACCAAAAACAAGACTCAATTACTTGAACACCT
CAAGGAACTCAGAACTGAGCTCTCAAGTTTAAGAGTTGCCCAAGTTAAATCACCAAACCC
AAGCAAATTAGCCAAAATCGGTACCGTCCGTAAAGCTATTGCCCGTGTTTTAACTGTTTT
CAACCAAACTCAAAAGAACCATCTCCGTGCTGTCTATTCTAAAAAATCATCAAGCAAGAT
CCCAACTGATCTCCGTTACAAAAAGACTAGAGCCATCAGAAGACGTTTCACCAACAAACA
ATCTAAAGTTGTCACCTTAAGAGTTTCCAAAACTGCCACCAACTTCCCACAAAGAGTTTT
CGCTGTTAAAGCCTAAATTTGCATTTAGATGATTTTAAAAAATAAAATATATTAA
Length of full length seq. 415