>VSC863 (VSC863Q) /CSM/VS/VSC8-C/VSC863Q.Seq.d/
XXXXXXXXXXTAATACAAATAGTGATACTTTAGAAGTACTTGGATACAATTAATAGGTAT
GTAAATTTATATTATATTATATTTTTTTATATATTTGTACCTAAAAAATATATAAATATA
TATATTAATATAATTTTATTATTTTTATTTTTTATTAGATTAAAAAAAAAAAGAGAATTA
AATTCAAAATTAGCAGGTAAATCTATAGCTGAACAATTATTAGAAGGTGAAAATGAAGAT
GAAGATGATGATATATCAAGTTGGATAAATAAATCAAGACTAAATGAAAAACAAAAACAA
ATTGAAAGAAAGAAAGAATTATTAAATAAAAAACAACAAAAACAACAACAACATTATAAT
CAAAGTAATTTAAAGGGTATGAAAGTTGGTAATGATATTAAATATTTTGAAGATGAAAAT
GAACATATTTTAACTTTACAAGATTCAAGTGTATTAGAAGATTCTGAGGATGTATTGATA
AATGTTAATTTAAA

---iqivil*KYLDTINRYVNLYYIIFFYIFVPKKYINIYINIILLFLFFIRLKKKRELN
SKLAGKSIAEQLLEGENEDEDDDISSWINKSRLNEKQKQIERKKELLNKKQQKQQQHYNQ
SNLKGMKVGNDIKYFEDENEHILTLQDSSVLEDSEDVLINVNL

Frame A:
---ntnsdtlevlgyn**vckfilyyiflyict*kiykyiy*ynfiifify*ikkkkrik
fkisr*iys*tiirr*k*r*r**yikldk*iktk*ktktn*kkeriik*kttkttttl*s
k*fkgyesw**y*if*r*k*tyfnftrfkcirrf*gcidkc*fk


Frame B:
---iqivil*KYLDTINRYVNLYYIIFFYIFVPKKYINIYINIILLFLFFIRLKKKRELN
SKLAGKSIAEQLLEGENEDEDDDISSWINKSRLNEKQKQIERKKELLNKKQQKQQQHYNQ
SNLKGMKVGNDIKYFEDENEHILTLQDSSVLEDSEDVLINVNL


Frame C:
---yk**yfrstwiqligm*iyiilyffiylylkni*iyili*fyyfyflld*kkken*i
qn*qvnl*lnny*kvkmkmkmmiyqvg*inqd*mknknklkerkny*iknnknnnniiik
vi*rv*klvmilnilkmkmnif*lykiqvy*kilrmy**mli*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC863 (VSC863Q) /CSM/VS/VSC8-C/VSC863Q.Seq.d/                        280   2e-74
VSB834 (VSB834Q) /CSM/VS/VSB8-B/VSB834Q.Seq.d/                        280   2e-74
FC-AE05 (FC-AE05Q) /CSM/FC/FC-AE/FC-AE05Q.Seq.d/                      278   8e-74
VHH281 (VHH281Q) /CSM/VH/VHH2-D/VHH281Q.Seq.d/                        165   8e-40
AFD395 (AFD395Q) /CSM/AF/AFD3-D/AFD395Q.Seq.d/                         50   3e-05
VSD212 (VSD212Q) /CSM/VS/VSD2-A/VSD212Q.Seq.d/                         42   0.008
VHP393 (VHP393Q) /CSM/VH/VHP3-D/VHP393Q.Seq.d/                         42   0.008
VHC887 (VHC887Q) /CSM/VH/VHC8-D/VHC887Q.Seq.d/                         42   0.008
SHA674 (SHA674Q) /CSM/SH/SHA6-D/SHA674Q.Seq.d/                         42   0.008
VSB230 (VSB230Q) /CSM/VS/VSB2-B/VSB230Q.Seq.d/                         40   0.031

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BG603430|BG603430.1 EST502520 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDR51, mRNA sequence.    42  3e-04  3
AU087765|AU087765.1 Plasmodium falciparum 3D7 cDNA clone from Sugano malaria cDNA library: XPFn5652.    44  0.001  2
AL132958|AL132958.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T4D2.    44  0.003  2
BG601380|BG601380.1 EST500470 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDB58, mRNA sequence.    36  0.012  3
BG602949|BG602949.1 EST502039 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDM34, mRNA sequence.    36  0.012  3
BG602396|BG602396.1 EST501486 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDH71, mRNA sequence.    36  0.012  3
BG602858|BG602858.1 EST501948 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDL41, mRNA sequence.    36  0.012  3
BG603486|BG603486.1 EST502576 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDS17, mRNA sequence.    36  0.013  3
BG603363|BG603363.1 EST502453 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDQ80, mRNA sequence.    38  0.015  2
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    40  0.015  8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017349_367(AE017349|pid:none) Cryptococcus neoformans var. neo...    50   3e-05
AE017349_368(AE017349|pid:none) Cryptococcus neoformans var. neo...    50   3e-05
BC076544_1(BC076544|pid:none) Danio rerio squamous cell carcinom...    44   0.002
FN357917_9(FN357917|pid:none) Schistosoma mansoni genome sequenc...    42   0.010
AY814260_1(AY814260|pid:none) Schistosoma japonicum SJCHGC09169 ...    41   0.013
AF042797_4(AF042797|pid:none) Takifugu rubripes FRG1 (FRG1), N-a...    41   0.017
AF299060_1(AF299060|pid:none) Tetraodon nigroviridis squamous-ce...    41   0.017
AF129931_1(AF129931|pid:none) Mus musculus hypoxia associated fa...    40   0.039
AK223016_1(AK223016|pid:none) Homo sapiens mRNA for squamous cel...    40   0.039
BC028823_1(BC028823|pid:none) Mus musculus squamous cell carcino...    40   0.039

 psg: 0.99  gvh: 0.52  alm: 0.26  top: 0.80  tms: 0.07  mit: 0.36  mip: 0.08
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.12  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VSC863 is nuc

>VSC863Z.Seq
----------TAATACAAATAGTGATACTTTAGAAGTACTTGGATACAATTAATAGGTAT
GTAAATTTATATTATATTATATTTTTTTATATATTTGTACCTAAAAAATATATAAATATA
TATATTAATATAATTTTATTATTTTTATTTTTTATTAGATTAAAAAAAAAAAGAGAATTA
AATTCAAAATTAGCAGGTAAATCTATAGCTGAACAATTATTAGAAGGTGAAAATGAAGAT
GAAGATGATGATATATCAAGTTGGATAAATAAATCAAGACTAAATGAAAAACAAAAACAA
ATTGAAAGAAAGAAAGAATTATTAAATAAAAAACAACAAAAACAACAACAACATTATAAT
CAAAGTAATTTAAAGGGTATGAAAGTTGGTAATGATATTAAATATTTTGAAGATGAAAAT
GAACATATTTTAACTTTACAAGATTCAAGTGTATTAGAAGATTCTGAGGATGTATTGATA
AATGTTAATTTAAA