VSC833
Library VS
(Link to library)
Clone ID VSC833
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSC833Z
(Link to Original site)
Representative DNA sequence
>VSC833 (VSC833Q) /CSM/VS/VSC8-B/VSC833Q.Seq.d/
XXXXXXXXXXCGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTTTCATCCTTC
CACTCCGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTGAATTCGTCT
TTGGTTGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATCTCAAATTCT
TTGCTACCCCTGAAAGACCAGATGAACCATCTCAAATCAATGAAGATTGGGCAATCCTTC
AACTTAAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTT
CTTTAAATCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTACCCAC
AACTTGTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCACATTAAAC
CAAACTTCACTGAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGGTAATGATC
CAGATTATGTTAAAAAACCATTAGCCTCAAAAGATGATTAAATGAAATAACTTAAAAACC
AATTATTTACTTTTGACAAACAGTAATATTAATAAATACA
sequence update 2000.10.12
Translated Amino Acid sequence
---AYVIGKLSFVFFRFILPLRYHSFTDLICYFLIAEFVFGWYLTINFQVSHVAEDLKFF
ATPERPDEPSQINEDWAILQLKTTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQ
LVPIVKEVCKEHNITYHIKPNFTEAIMSHINYLYKMGNDPDYVKKPLASKDD*mk*lknq
lftfdkq*y**i


Translated Amino Acid sequence (All Frames)
Frame A:
---AYVIGKLSFVFFRFILPLRYHSFTDLICYFLIAEFVFGWYLTINFQVSHVAEDLKFF
ATPERPDEPSQINEDWAILQLKTTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQ
LVPIVKEVCKEHNITYHIKPNFTEAIMSHINYLYKMGNDPDYVKKPLASKDD*mk*lknq
lftfdkq*y**i


Frame B:
---ltslvncllfssvssfhsviialqi*fvissllnsslvgisqlisklvmslkisnsl
lplkdqmnhlksmkigqsfnlkllkimvmvhsfvpflvvl*iiklfiiyshqllkisthn
lyql*kkfvknitllttlnqtslkllchtlitftkwvmiqimlknh*pqkmik*nnlktn
yllltnsninky


Frame C:
---lrhw*ivfcflpfhpstpls*lyrfnllfphc*irlwlvshn*fps*scr*rsqilc
yp*ktr*tisnq*rlgnpst*nysrlwswftplylf*wffkssscssfipincsrflptt
ctnckrsl*rt*hylph*tklh*syyvth*lplqng**srlc*ktislkr*lneit*kpi
iyf*qtvilint


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSC833 (VSC833Q) /CSM/VS/VSC8-B/VSC833Q.Seq.d/ 1130 0.0
SSB813 (SSB813Q) /CSM/SS/SSB8-A/SSB813Q.Seq.d/ 1130 0.0
SLE621 (SLE621Q) /CSM/SL/SLE6-A/SLE621Q.Seq.d/ 1130 0.0
SLA259 (SLA259Q) /CSM/SL/SLA2-C/SLA259Q.Seq.d/ 1130 0.0
SLA256 (SLA256Q) /CSM/SL/SLA2-C/SLA256Q.Seq.d/ 1130 0.0
SLG121 (SLG121Q) /CSM/SL/SLG1-A/SLG121Q.Seq.d/ 1116 0.0
SLC603 (SLC603Q) /CSM/SL/SLC6-A/SLC603Q.Seq.d/ 1031 0.0
VSF803 (VSF803Q) /CSM/VS/VSF8-A/VSF803Q.Seq.d/ 1027 0.0
CFC256 (CFC256Q) /CSM/CF/CFC2-C/CFC256Q.Seq.d/ 1025 0.0
VFN880 (VFN880Q) /CSM/VF/VFN8-D/VFN880Q.Seq.d/ 1019 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BD092935|BD092935.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids in plants. 1130 0.0 1
BD082645|BD082645.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids. 1130 0.0 1
BD082630|BD082630.1 Methods and compositions for synthesis of long chain poly-unsaturated fatty acids. 1130 0.0 1
AB029311|AB029311.1 Dictyostelium discoideum Dd des5 gene for fatty acid desaturase, complete cds. 632 0.0 2
AB022097|AB022097.1 Dictyostelium discoideum mRNA for delta 5 fatty acid desaturase, complete cds. 90 7e-46 5
BZ033449|BZ033449.1 oej70g10.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 46 0.48 1
BZ067998|BZ067998.1 lki76e10.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 46 0.48 1
BF793106|BF793106.1 602254090F1 NIH_MGC_84 Homo sapiens cDNA clone IMAGE:4346086 5', mRNA sequence. 36 0.59 2
AC024709|AC024709.5 Homo sapiens chromosome 3 clone RP11-147G7, WORKING DRAFT SEQUENCE, 19 unordered pieces. 36 0.77 4
AL591476|AL591476.7 Zebrafish DNA sequence from clone XX-263J20 on chromosome 7 Contains a gene for a novel kinase with a CNH domain, one complete and part of five genes for novel proteins similar to novel immune-type receptors (nitr), a novel gene similar to nitr4 and part of a novel gene similar to nitr1. 36 0.78 5
dna update 2003. 8.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9Y1W0) RecName: Full=Delta(5) fatty acid desaturase A; ... 357 1e-97
(O96099) RecName: Full=Delta(5) fatty acid desaturase B; ... 248 8e-65
(Q1ZXQ5) RecName: Full=Probable Delta(5) fatty acid desaturase C... 206 3e-52
AF419297_1(AF419297|pid:none) Pythium irregulare delta-5 fatty a... 138 1e-31
AB188307_1(AB188307|pid:none) Mortierella alpina gene for delta5... 136 4e-31
(O74212) RecName: Full=Delta(5) fatty acid desaturase; ... 135 8e-31
CP000592_278(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 130 2e-29
EF678404_1(EF678404|pid:none) Picea sitchensis clone WS0291_A04 ... 119 6e-26
CP001574_328(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 117 2e-25
CS020137_1(CS020137|pid:none) Sequence 91 from Patent WO20050123... 116 4e-25
protein update 2009. 7.29
PSORT

psg: 0.84 gvh: 0.61 alm: 0.33 top: 0.50 tms: 0.00 mit: 0.38 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: mitochondrial
32.0 %: nuclear
16.0 %: cytoplasmic
8.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for VSC833 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSC833Z
3' end seq.
>VSC833Z.Seq
----------CGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTTTCATCCTTC
CACTCCGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTGAATTCGTCT
TTGGTTGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATCTCAAATTCT
TTGCTACCCCTGAAAGACCAGATGAACCATCTCAAATCAATGAAGATTGGGCAATCCTTC
AACTTAAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTT
CTTTAAATCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTACCCAC
AACTTGTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCACATTAAAC
CAAACTTCACTGAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGGTAATGATC
CAGATTATGTTAAAAAACCATTAGCCTCAAAAGATGATTAAATGAAATAACTTAAAAACC
AATTATTTACTTTTGACAAACAGTAATATTAATAAATACA
Length of 3' end seq. 570
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -