>VSC819 (VSC819Q) /CSM/VS/VSC8-A/VSC819Q.Seq.d/
XXXXXXXXXXCAACCACAAATTTTGACTGCTCTCAAACGTAAACAGAATTAAGAGAAAAA
GTCGATGTCAATTTCGATGGTCGTGTCTCTTTCCTCGAATATCTCTTATATCAATACAAA
GATTTCGCCAATCCAGCTGATTTCTGTACTCGTTCAATGAACCACGATGAACATCCAGAA
ATCAAAAAAGCTCGTTTAGCTCTCGAAGAAGTCAACAAACGTATTCGTGCTTACGAAGAA
GAAAAAGCCCGTTTAACCGAAGAATCAAAGATTCCAGGTGTCAAAGGTCTCGGTGCCACA
AACATGCTCGCTCAAATTGATAGTGGTCCATTAAAGGAACAACTCAACTTTGCCCTTATC
TCTGCTGAAGCTGCTGTTCGTACTGCTTCAAAGAAATATGGTGGTGCTGCTTATTCAGGT
GGTGCTGGTGATGCTGGTGCTGGTTCCTCTGCTGGTGCCATTTGGTGGATGAATCGTGAT
TTAGAAGAAAAGAAAAAGAGATACGGTCCACAAAAGAAATAAATATTCTATTTGCCCGAA
CAATTTAATTTGTAAAACAGAATATAAAAATC

---ttnfdcsqt*TELREKVDVNFDGRVSFLEYLLYQYKDFANPADFCTRSMNHDEHPEI
KKARLALEEVNKRIRAYEEEKARLTEESKIPGVKGLGATNMLAQIDSGPLKEQLNFALIS
AEAAVRTASKKYGGAAYSGGAGDAGAGSSAGAIWWMNRDLEEKKKRYGPQKK*ifylpeq
fnl*nri*k

Frame A:
---nhkf*llsnvnrikrksrcqfrwsclfprislisiqrfrqss*flysfnepr*tsrn
qkssfssrrsqqtysclrrrkspfnrrikdsrcqrsrchkharsn**wsikgttqlcpyl
c*sccsycfkeiwwcclfrwcw*cwcwflcwchlvdes*frrkekeirstkeinilfart
i*fvkqniki


Frame B:
---ttnfdcsqt*TELREKVDVNFDGRVSFLEYLLYQYKDFANPADFCTRSMNHDEHPEI
KKARLALEEVNKRIRAYEEEKARLTEESKIPGVKGLGATNMLAQIDSGPLKEQLNFALIS
AEAAVRTASKKYGGAAYSGGAGDAGAGSSAGAIWWMNRDLEEKKKRYGPQKK*ifylpeq
fnl*nri*k


Frame C:
---pqiltalkrkqn*ekksmsismvvslssnisyintkispiqlisvlvq*ttmniqks
kklv*lskkstnvfvltkkkkpv*pknqrfqvskvsvpqtcslklivvh*rnnstlplsl
lkllfvllqrnmvvlliqvvlvmlvlvpllvpfgg*ivi*kkrkrdtvhkrnkysicpnn
lickteykn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC819 (VSC819Q) /CSM/VS/VSC8-A/VSC819Q.Seq.d/                       1114   0.0
VSD421 (VSD421Q) /CSM/VS/VSD4-A/VSD421Q.Seq.d/                       1092   0.0
VHA660 (VHA660Q) /CSM/VH/VHA6-C/VHA660Q.Seq.d/                       1092   0.0
SHD143 (SHD143Q) /CSM/SH/SHD1-B/SHD143Q.Seq.d/                       1092   0.0
VSI777 (VSI777Q) /CSM/VS/VSI7-D/VSI777Q.Seq.d/                       1076   0.0
SHK572 (SHK572Q) /CSM/SH/SHK5-C/SHK572Q.Seq.d/                       1068   0.0
VFH678 (VFH678Q) /CSM/VF/VFH6-D/VFH678Q.Seq.d/                       1055   0.0
FC-AW12 (FC-AW12Q) /CSM/FC/FC-AW/FC-AW12Q.Seq.d/                      967   0.0
SFF690 (SFF690Q) /CSM/SF/SFF6-D/SFF690Q.Seq.d/                        936   0.0
SLG242 (SLG242Q) /CSM/SL/SLG2-B/SLG242Q.Seq.d/                        898   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M58022|M58022.1 Dictyostelium 30,000 dalton actin bundling protein mRNA, complete cds.  1047  0.0  2
Z50156|Z50156.1 D.discoideum gene for 34 kD actin binding protein.   961  0.0  2
U32112|U32112.1 Dictyostelium discoideum 34 kDa actin binding protein gene, complete cds.   961  0.0  2
L08067|L08067.1 Physarum polycephalum actin bundling protein, 3' end.    48  1e-07  3
X73390|X73390.1 H.influenzae (3224A) gene for MOMP P2.            42  0.042  2
AY028456|AY028456.1 Petromyzon marinus estrogen receptor mRNA, partial cds.    46  0.062  2
AJ404969|AJ404969.1 Homo sapiens MOCS1 gene, exon 10 and MOCS1B CDS.    48  0.12  1
AJ293579|AJ293579.1 Homo sapiens partial MOCS1 gene, exon 9.      48  0.12  1
AL591053|AL591053.2 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP3-371C6.    48  0.13  2
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    38  0.15  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P24005) RecName: Full=Calcium-regulated actin-bundling protein;...   260   7e-70
CP000568_548(CP000568|pid:none) Clostridium thermocellum ATCC 27...    37   0.50
CP000568_919(CP000568|pid:none) Clostridium thermocellum ATCC 27...    34   3.2
BA000040_1657(BA000040|pid:none) Bradyrhizobium japonicum USDA 1...    33   5.5
CP000806_412(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul...    33   5.5

 psg: 0.75  gvh: 0.27  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.07  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSC819 is nuc

>VSC819Z.Seq
----------CAACCACAAATTTTGACTGCTCTCAAACGTAAACAGAATTAAGAGAAAAA
GTCGATGTCAATTTCGATGGTCGTGTCTCTTTCCTCGAATATCTCTTATATCAATACAAA
GATTTCGCCAATCCAGCTGATTTCTGTACTCGTTCAATGAACCACGATGAACATCCAGAA
ATCAAAAAAGCTCGTTTAGCTCTCGAAGAAGTCAACAAACGTATTCGTGCTTACGAAGAA
GAAAAAGCCCGTTTAACCGAAGAATCAAAGATTCCAGGTGTCAAAGGTCTCGGTGCCACA
AACATGCTCGCTCAAATTGATAGTGGTCCATTAAAGGAACAACTCAACTTTGCCCTTATC
TCTGCTGAAGCTGCTGTTCGTACTGCTTCAAAGAAATATGGTGGTGCTGCTTATTCAGGT
GGTGCTGGTGATGCTGGTGCTGGTTCCTCTGCTGGTGCCATTTGGTGGATGAATCGTGAT
TTAGAAGAAAAGAAAAAGAGATACGGTCCACAAAAGAAATAAATATTCTATTTGCCCGAA
CAATTTAATTTGTAAAACAGAATATAAAAATC