>VSC814 (VSC814Q) /CSM/VS/VSC8-A/VSC814Q.Seq.d/
XXXXXXXXXXATATGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGAGTCAAACTT
TAAATGAAGGTTCTTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATATAATCTATG
GTGGTAGTTATAAACCATACATTGATCAAATGAATAAATTTAATCCTGGATTAAATATCA
AATTCTTTAGAGAAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGATGCCTTCA
CTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGATTACT
TGGGTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTACCATGAAAATAATAATAATAAT
AATAATAATAATTATATAAATTACATAAAGGTTTCACTATTGGTGTTTTAATCCTGGTAT
AAATAAAATTCTAAAAATAAAAAATAAAAAACTATATAAAAATTAAAA

---YEDTVTSEETRSWSQTLNEGSYIVYQNVLVYAYIIYGGSYKPYIDQMNKFNPGLNIK
FFREDKCIFFVPINRDDAFTLRYQDNTWDPVEYDVLIDYLGQNQDKWFSGGLP*k*****
***lyklhkgftigvlilv*ikf*k*kiknyikik

Frame A:
---YEDTVTSEETRSWSQTLNEGSYIVYQNVLVYAYIIYGGSYKPYIDQMNKFNPGLNIK
FFREDKCIFFVPINRDDAFTLRYQDNTWDPVEYDVLIDYLGQNQDKWFSGGLP*k*****
***lyklhkgftigvlilv*ikf*k*kiknyikik


Frame B:
---mktllhlkklevgvkl*mkvlilfiktf*fmli*smvvvinhtlik*inlild*isn
slekinvsflyqlivmmpslfvikiihgiqlnmmf*litwvkikingflvvyhennnnnn
nnnyinyikvsllvf*swyk*nsknkk*kti*klk


Frame C:
---*rhcyi*rn*klesnfk*rflyclskrfslclynlww*l*tih*sne*i*swikyqi
l*rr*mylfctn*s**clhsslsr*ymgss*i*cfn*llgsksr*mvfwwftmkiiiiii
iiii*it*rfhywcfnpginkilkiknkklykn*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK377 (VSK377Q) /CSM/VS/VSK3-D/VSK377Q.Seq.d/                        664   0.0
VSJ788 (VSJ788Q) /CSM/VS/VSJ7-D/VSJ788Q.Seq.d/                        664   0.0
VSJ730 (VSJ730Q) /CSM/VS/VSJ7-B/VSJ730Q.Seq.d/                        664   0.0
VSI304 (VSI304Q) /CSM/VS/VSI3-A/VSI304Q.Seq.d/                        664   0.0
VSI168 (VSI168Q) /CSM/VS/VSI1-C/VSI168Q.Seq.d/                        664   0.0
VSF487 (VSF487Q) /CSM/VS/VSF4-D/VSF487Q.Seq.d/                        664   0.0
VSF255 (VSF255Q) /CSM/VS/VSF2-C/VSF255Q.Seq.d/                        664   0.0
VSE526 (VSE526Q) /CSM/VS/VSE5-B/VSE526Q.Seq.d/                        664   0.0
VSD543 (VSD543Q) /CSM/VS/VSD5-B/VSD543Q.Seq.d/                        664   0.0
VSC814 (VSC814Q) /CSM/VS/VSC8-A/VSC814Q.Seq.d/                        664   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U48706|U48706.1 Dictyostelium discoideum small aggregate formation (smlA) gene, complete cds.   664  0.0  2
X94341|X94341.1 D.discoideum mRNA for unknown protein with homology to spore germination protein.    86  1e-23  3
CA930567|CA930567.1 MTU4CA.P24.B01 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.18  2
CA930485|CA930485.1 MTU4CA.P23.B04 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.18  2
CA930468|CA930468.1 MTU4CA.P22.H11 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.18  2
CA930577|CA930577.1 MTU4CA.P24.B11 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.18  2
AC123872|AC123872.4 Mus musculus chromosome 2 clone RP23-254P8, complete sequence.    46  0.38  1
AC008597|AC008597.8 Homo sapiens chromosome 5 clone CTB-102L23, complete sequence.    36  1.5  4
CA571048|CA571048.1 K0515B07-5N NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) cDNA Library (Long) Mus musculus cDNA clone NIA:K0515B07 IMAGE:30065298 5', mRNA sequence.    44  1.5  1
AC108774|AC108774.6 Mus musculus clone RP23-249J23, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.    44  1.5  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE001362_167(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.29
AC116330_41(AC116330|pid:none) Dictyostelium discoideum chromoso...    33   2.4
CP001083_2319(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    33   2.4
AE014187_316(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   3.2
CP000939_2199(CP000939|pid:none) Clostridium botulinum B1 str. O...    33   4.2
AM412317_2201(AM412317|pid:none) Clostridium botulinum A str. AT...    33   4.2
CP001649_2809(CP001649|pid:none) Desulfovibrio salexigens DSM 26...    32   5.4
CP000246_1119(CP000246|pid:none) Clostridium perfringens ATCC 13...    32   7.1
CP000312_958(CP000312|pid:none) Clostridium perfringens SM101, c...    32   7.1
CP000568_1767(CP000568|pid:none) Clostridium thermocellum ATCC 2...    32   9.2

 psg: 0.75  gvh: 0.26  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VSC814 is nuc

>VSC814Z.Seq
----------ATATGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGAGTCAAACTT
TAAATGAAGGTTCTTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATATAATCTATG
GTGGTAGTTATAAACCATACATTGATCAAATGAATAAATTTAATCCTGGATTAAATATCA
AATTCTTTAGAGAAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGATGCCTTCA
CTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGATTACT
TGGGTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTACCATGAAAATAATAATAATAAT
AATAATAATAATTATATAAATTACATAAAGGTTTCACTATTGGTGTTTTAATCCTGGTAT
AAATAAAATTCTAAAAATAAAAAATAAAAAACTATATAAAAATTAAAA