>VSC792 (VSC792Q) /CSM/VS/VSC7-D/VSC792Q.Seq.d/
XXXXXXXXXXATGGATTACACCATGTTCAGCATTTATGAGATACATTAAATCGTATCCAA
TTGTTGGAACTGTAACAGAGACAATGGAAAAGAAAAAAGGTTTCACCAATAGATTCTTAT
CAACTAGTGAAACCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGTGAATCATCGATGG
AAGTTACAAGTGGTTATGAATATGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGA
GTCAAACTTTAAATGAAGGTTCTTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATA
TAATCTATGGTGGTAGTTATAAACCATACATTGATCAAATGAATAAATTTAATCCTGGAT
TAAATATCAAATTCTTTAGAGAAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATG
ATGCCTTCACTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTTTAA
TTGATTACTTGGGTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTACCATGAAAATAAT
AATAATAATAATAATAATAATTATATAAATTACATAAAGGTTTCACTATTGGTGTTTTAA
TCCTGGTATAAATAAAATTCT

---WITPCSAFMRYIKSYPIVGTVTETMEKKKGFTNRFLSTSETKASVSVGFFGCESSME
VTSGYEYEDTVTSEETRSWSQTLNEGSYIVYQNVLVYAYIIYGGSYKPYIDQMNKFNPGL
NIKFFREDKCIFFVPINRDDAFTLRYQDNTWDPVEYDVLIDYLGQNQDKWFSGGLP*k**
******lyklhkgftigvlilv*ikf

Frame A:
---WITPCSAFMRYIKSYPIVGTVTETMEKKKGFTNRFLSTSETKASVSVGFFGCESSME
VTSGYEYEDTVTSEETRSWSQTLNEGSYIVYQNVLVYAYIIYGGSYKPYIDQMNKFNPGL
NIKFFREDKCIFFVPINRDDAFTLRYQDNTWDPVEYDVLIDYLGQNQDKWFSGGLP*k**
******lyklhkgftigvlilv*ikf


Frame B:
---glhhvqhl*dtlnriqllel*qrqwkrkkvspidsyqlvkpkhqfqsdslvvnhrwk
lqvvmnmktllhlkklevgvkl*mkvlilfiktf*fmli*smvvvinhtlik*inlild*
isnslekinvsflyqlivmmpslfvikiihgiqlnmmf*litwvkikingflvvyhennn
nnnnnnyinyikvsllvf*swyk*ns


Frame C:
---dytmfsiyeih*ivsncwncnrdngkekrfhq*ilin**nqsisfsrilwl*iidgs
ykwl*i*rhcyi*rn*klesnfk*rflyclskrfslclynlww*l*tih*sne*i*swik
yqil*rr*mylfctn*s**clhsslsr*ymgss*i*cfn*llgsksr*mvfwwftmkiii
iiiiiii*it*rfhywcfnpginki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ730 (VSJ730Q) /CSM/VS/VSJ7-B/VSJ730Q.Seq.d/                       1039   0.0
VSD543 (VSD543Q) /CSM/VS/VSD5-B/VSD543Q.Seq.d/                       1039   0.0
VSC792 (VSC792Q) /CSM/VS/VSC7-D/VSC792Q.Seq.d/                       1039   0.0
VHJ463 (VHJ463Q) /CSM/VH/VHJ4-C/VHJ463Q.Seq.d/                       1039   0.0
VHB403 (VHB403Q) /CSM/VH/VHB4-A/VHB403Q.Seq.d/                       1039   0.0
VFI758 (VFI758Q) /CSM/VF/VFI7-C/VFI758Q.Seq.d/                       1039   0.0
VFI142 (VFI142Q) /CSM/VF/VFI1-B/VFI142Q.Seq.d/                       1039   0.0
VFC716 (VFC716Q) /CSM/VF/VFC7-A/VFC716Q.Seq.d/                       1039   0.0
VFJ763 (VFJ763Q) /CSM/VF/VFJ7-C/VFJ763Q.Seq.d/                       1033   0.0
VSI168 (VSI168Q) /CSM/VS/VSI1-C/VSI168Q.Seq.d/                       1031   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U48706|U48706.1 Dictyostelium discoideum small aggregate formation (smlA) gene, complete cds.  1039  0.0  2
X94341|X94341.1 D.discoideum mRNA for unknown protein with homology to spore germination protein.    86  3e-41  5
AC116158|AC116158.5 Homo sapiens chromosome , clone RP11-102L12, complete sequence.    44  0.18  5
CA930567|CA930567.1 MTU4CA.P24.B01 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.32  2
CA930485|CA930485.1 MTU4CA.P23.B04 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.32  2
CA930468|CA930468.1 MTU4CA.P22.H11 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.32  2
CA930577|CA930577.1 MTU4CA.P24.B11 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.32  2
AC123872|AC123872.4 Mus musculus chromosome 2 clone RP23-254P8, complete sequence.    46  0.52  1
AB027295|AB027295.1 Physarum polycephalum mitochondrial DNA, complete genome.    38  0.64  6
AC110380|AC110380.4 Mus musculus clone RP24-194P24, complete sequence.    38  0.97  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_42(AC116330|pid:none) Dictyostelium discoideum chromoso...    48   3e-04
CP000712_1048(CP000712|pid:none) Pseudomonas putida F1, complete...    42   0.011
AC116330_41(AC116330|pid:none) Dictyostelium discoideum chromoso...    42   0.014
CP001083_1669(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    37   0.59
AE001362_167(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.59
DQ790236_1(DQ790236|pid:none) Champereia manillana acetyl co-A c...    37   0.59
DQ790237_1(DQ790237|pid:none) Agonandra macrocarpa acetyl co-A c...    36   1.0
AY332625_22(AY332625|pid:none) Campylobacter jejuni serotype HS:...    35   1.3
BX545858_22(BX545858|pid:none) Campylobacter jejuni.                   35   2.2
AY934867_3(AY934867|pid:none) Campylobacter jejuni subsp. jejuni...    35   2.2

 psg: 0.74  gvh: 0.44  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for VSC792 is nuc

>VSC792Z.Seq
----------ATGGATTACACCATGTTCAGCATTTATGAGATACATTAAATCGTATCCAA
TTGTTGGAACTGTAACAGAGACAATGGAAAAGAAAAAAGGTTTCACCAATAGATTCTTAT
CAACTAGTGAAACCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGTGAATCATCGATGG
AAGTTACAAGTGGTTATGAATATGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGA
GTCAAACTTTAAATGAAGGTTCTTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATA
TAATCTATGGTGGTAGTTATAAACCATACATTGATCAAATGAATAAATTTAATCCTGGAT
TAAATATCAAATTCTTTAGAGAAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATG
ATGCCTTCACTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTTTAA
TTGATTACTTGGGTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTACCATGAAAATAAT
AATAATAATAATAATAATAATTATATAAATTACATAAAGGTTTCACTATTGGTGTTTTAA
TCCTGGTATAAATAAAATTCT