VSC691
Library VS
(Link to library)
Clone ID VSC691
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16544-1
Original site URL
Representative seq. ID VSC691Z
(Link to Original site)
Representative DNA sequence
>VSC691 (VSC691Q) /CSM/VS/VSC6-D/VSC691Q.Seq.d/
XXXXXXXXXXTTTCAAACGAATTTCCAACCTTTACCTTCGTTCCTGTTGACCTTGGTAAA
GTAAATACTCATCCCATTGTAAAAGAAATTTGAAGTNTTCCNACCTTCTATTTTTACGTA
AATGGGGCTAAAGTTTCNGAATTCCGTGGTGCCCNTGAAGCAACTTTNGGAAGTACTTTT
GAAGCCAACCTTTAATTTTTTGTTAAATTAATAATTGCCCAAAAAATGCCNCAAATTAAA
TAAATAATTAAAAAAAAAAAAATAATTCCCAAATTATTTTATTTAATTTATATTTTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
sequence update 2000.10.12
Translated Amino Acid sequence
---snefptftfvpvdlgkvnthpivkei*sxptfyfyvngakvsefrgaxeatxgstfe
anl*ffvkliiaqkmpqik*IIKKKKIIPKLFYLIYILKKKKKKKKKKKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
---fkrisnlylrsc*pw*skysshckrnlkxsxllflrkwg*sfxipwcp*snfxkyf*
sqplifc*inncpknaxn*inn*kkknnsqiilfnlyfkkkkkkkkkkkkkkkkkkkkkk


Frame B:
---snefptftfvpvdlgkvnthpivkei*sxptfyfyvngakvsefrgaxeatxgstfe
anl*ffvkliiaqkmpqik*IIKKKKIIPKLFYLIYILKKKKKKKKKKKKKKKKKKKKK


Frame C:
---qtnfqplpsflltlvk*ilipl*kkfevfxpsift*mglkfxnsvvpxkqlxevllk
ptfnflln**lpkkcxklnk*lkkkk*fpnyfi*fif*kkkkkkkkkkkkkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSC691 (VSC691Q) /CSM/VS/VSC6-D/VSC691Q.Seq.d/ 331 4e-90
VSC167 (VSC167Q) /CSM/VS/VSC1-C/VSC167Q.Seq.d/ 192 3e-48
SSE474 (SSE474Q) /CSM/SS/SSE4-D/SSE474Q.Seq.d/ 182 2e-45
VSK430 (VSK430Q) /CSM/VS/VSK4-B/VSK430Q.Seq.d/ 174 6e-43
VSJ595 (VSJ595Q) /CSM/VS/VSJ5-D/VSJ595Q.Seq.d/ 174 6e-43
VSH762 (VSH762Q) /CSM/VS/VSH7-C/VSH762Q.Seq.d/ 174 6e-43
VSH381 (VSH381Q) /CSM/VS/VSH3-D/VSH381Q.Seq.d/ 174 6e-43
VSG372 (VSG372Q) /CSM/VS/VSG3-C/VSG372Q.Seq.d/ 174 6e-43
VSF839 (VSF839Q) /CSM/VS/VSF8-B/VSF839Q.Seq.d/ 174 6e-43
VSF259 (VSF259Q) /CSM/VS/VSF2-C/VSF259Q.Seq.d/ 174 6e-43

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M91383|M91383.1 Dictyostelium discoideum thioredoxin (TRX3) mRNA, complete cds. 159 3e-35 1
M91382|M91382.1 Dictyostelium discoideum thioredoxin (TRX2) mRNA, 5' end. 98 9e-17 1
M91384|M91384.1 Dictyostelium discoideum thioredoxin (TRX1) mRNA, complete cds. 60 3e-13 2
AC012490|AC012490.3 Homo sapiens BAC clone RP11-164G2 from 7p14-p13, complete sequence. 52 0.005 1
AC108974|AC108974.5 Rattus norvegicus clone CH230-258F1, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 46 0.29 1
AC101539|AC101539.1 Mus musculus clone RP23-192L8, LOW-PASS SEQUENCE SAMPLING. 46 0.29 1
AC010247|AC010247.9 Homo sapiens chromosome 19 clone CTC-378H22, complete sequence. 46 0.29 1
BX284676|BX284676.8 Mouse DNA sequence from clone RP23-258L18 on chromosome X. 46 0.29 1
AC099347|AC099347.5 Rattus norvegicus clone CH230-3O13, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 46 0.29 1
AC020923|AC020923.9 Homo sapiens chromosome 5 clone CTD-2123J17, complete sequence. 46 0.29 1
dna update 2003. 8.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P29447) RecName: Full=Thioredoxin-3; Short=Trx-3; 96 3e-19
C46264(C46264) thioredoxin 3 - slime mold (Dictyostelium discoid... 94 2e-18
(P29446) RecName: Full=Thioredoxin-2; Short=Trx-2; Flag... 70 2e-11
BC129794_1(BC129794|pid:none) Xenopus laevis hypothetical protei... 39 0.076
FJ384985_1(FJ384985|pid:none) Bombina orientalis thioredoxin mRN... 39 0.076
BC166957_1(BC166957|pid:none) Xenopus tropicalis hypothetical pr... 39 0.076
(Q9DGI3) RecName: Full=Thioredoxin; Short=Trx; &AF2936... 38 0.099
BT056690_1(BT056690|pid:none) Salmo salar clone ssal-eve-542-050... 36 0.37
BT057724_1(BT057724|pid:none) Salmo salar clone ssal-evf-539-015... 36 0.49
BT073335_1(BT073335|pid:none) Oncorhynchus mykiss clone omyk-evn... 36 0.49
protein update 2009. 7.29
PSORT

psg: 0.93 gvh: 0.25 alm: 0.48 top: 0.67 tms: 0.00 mit: 0.35 mip: 0.00
nuc: 1.97 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: nuclear
20.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for VSC691 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSC691Z
3' end seq.
>VSC691Z.Seq
----------TTTCAAACGAATTTCCAACCTTTACCTTCGTTCCTGTTGACCTTGGTAAA
GTAAATACTCATCCCATTGTAAAAGAAATTTGAAGTNTTCCNACCTTCTATTTTTACGTA
AATGGGGCTAAAGTTTCNGAATTCCGTGGTGCCCNTGAAGCAACTTTNGGAAGTACTTTT
GAAGCCAACCTTTAATTTTTTGTTAAATTAATAATTGCCCAAAAAATGCCNCAAATTAAA
TAAATAATTAAAAAAAAAAAAATAATTCCCAAATTATTTTATTTAATTTATATTTTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
Length of 3' end seq. 352
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -