>VSC639 (VSC639Q) /CSM/VS/VSC6-B/VSC639Q.Seq.d/
XXXXXXXXXXACAATACACCCAACAATTCCAATTCCAAGGTACCCCNTCGGAACAAGAAT
CNTTCCCAAATGGTTTATACACTGTCCAAGGTTTCGTTTGTGAAGGTTCATGTGGTTCNC
CACATCCAAACACTTACACTTTTGCCAACGGTACCCCCACTTTCACCATTTCTGGTGCTG
GTTCTTCATCAATGTCTGGTGNTGGTTCTTTCTCTGGTTTTTCCCAATCAACCCAAANTG
GTGCCGCCTTTGGTTCAGGTTCAGGTTTTGCTTTATTTTAAAAAAATACTTTTTAAAATA
AATATTTAATTTTTTAATTTTTTATTTAATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---NTPNNSNSKVPXRNKNXSQMVYTLSKVSFVKVHVVXHIQTLTLLPTVPPLSPFLVLV
LHQCLVXVLSLVFPNQPKXVPPLVQVQVLLYFKKILFKINI*ffnflfnflkkkkkkkkk
kkkkkkkkkkkkkkk

Frame A:
---qytqqfqfqgtpseqesfpnglytvqgfvcegscgsphpntytfangtptftisgag
sssmsgxgsfsgfsqstqxgaafgsgsgfalf*kntf*nkylif*ffi*ffkkkkkkkkk
kkkkkkkkkkkkkkk


Frame B:
---NTPNNSNSKVPXRNKNXSQMVYTLSKVSFVKVHVVXHIQTLTLLPTVPPLSPFLVLV
LHQCLVXVLSLVFPNQPKXVPPLVQVQVLLYFKKILFKINI*ffnflfnflkkkkkkkkk
kkkkkkkkkkkkkkk


Frame C:
---ihptipiprypxgtrixpkwfihcprfrl*rfmwfxtskhlhfcqryphfhhfwcwf
finvwxwfflwffpinpxwcrlwfrfrfcfilkkyflk*ifnflifylif*kkkkkkkkk
kkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC639 (VSC639Q) /CSM/VS/VSC6-B/VSC639Q.Seq.d/                        474   e-133
VSC744 (VSC744Q) /CSM/VS/VSC7-B/VSC744Q.Seq.d/                        402   e-111
VSJ484 (VSJ484Q) /CSM/VS/VSJ4-D/VSJ484Q.Seq.d/                        394   e-109
VSI490 (VSI490Q) /CSM/VS/VSI4-D/VSI490Q.Seq.d/                        394   e-109
VSF843 (VSF843Q) /CSM/VS/VSF8-B/VSF843Q.Seq.d/                        394   e-109
VSF151 (VSF151Q) /CSM/VS/VSF1-C/VSF151Q.Seq.d/                        394   e-109
VSD390 (VSD390Q) /CSM/VS/VSD3-D/VSD390Q.Seq.d/                        394   e-109
VSC485 (VSC485Q) /CSM/VS/VSC4-D/VSC485Q.Seq.d/                        394   e-109
VSC373 (VSC373Q) /CSM/VS/VSC3-D/VSC373Q.Seq.d/                        394   e-109
VSB211 (VSB211Q) /CSM/VS/VSB2-A/VSB211Q.Seq.d/                        394   e-109

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF140780|AF140780.1 Dictyostelium discoideum countin gene, complete cds.   394  e-106  1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   394  e-105  2
AZ393080|AZ393080.1 1M0156C03F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0156C03 F, DNA sequence.    36  2.4  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86IV5) RecName: Full=Countin-1; Flags: Precursor;  &AC116986_1...    88   8e-17
AF140780_1(AF140780|pid:none) Dictyostelium discoideum countin g...    88   8e-17
(Q86HV8) RecName: Full=Countin-3; Flags: Precursor;  &AB211530_1...    58   9e-08
(Q8WSR7) RecName: Full=Countin-2; Flags: Precursor;  &AB067573_1...    49   7e-05
AF531841_1(AF531841|pid:none) Utricularia blanchetii trnK gene, ...    35   0.84
AF531842_1(AF531842|pid:none) Utricularia parthenopipes trnK gen...    35   0.84
AF531783_1(AF531783|pid:none) Pinguicula alpina trnK gene, intro...    33   4.1
DQ010656_1(DQ010656|pid:none) Pinguicula esseriana trnK gene, pa...    33   4.1
DQ010665_1(DQ010665|pid:none) Pinguicula sp. 'Pachuca' trnK gene...    33   4.1
DQ010661_1(DQ010661|pid:none) Pinguicula lusitanica trnK gene, p...    33   4.1

 psg: 0.46  gvh: 0.55  alm: 0.22  top: 0.57  tms: 0.07  mit: 0.53  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.11  leu: 0.11  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VSC639 is nuc

>VSC639Z.Seq
----------ACAATACACCCAACAATTCCAATTCCAAGGTACCCCNTCGGAACAAGAAT
CNTTCCCAAATGGTTTATACACTGTCCAAGGTTTCGTTTGTGAAGGTTCATGTGGTTCNC
CACATCCAAACACTTACACTTTTGCCAACGGTACCCCCACTTTCACCATTTCTGGTGCTG
GTTCTTCATCAATGTCTGGTGNTGGTTCTTTCTCTGGTTTTTCCCAATCAACCCAAANTG
GTGCCGCCTTTGGTTCAGGTTCAGGTTTTGCTTTATTTTAAAAAAATACTTTTTAAAATA
AATATTTAATTTTTTAATTTTTTATTTAATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA