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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSC623
Library VS
(Link to library)
Clone ID VSC623
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05855-1
Original site URL
Representative seq. ID VSC623E
(Link to Original site)
Representative DNA sequence 
>VSC623 (VSC623Q) /CSM/VS/VSC6-A/VSC623Q.Seq.d/
AGAANTATGATTCAGTTTTGGAAAATTGTTACTTTGATTTAATTAGAGGTTGGGTTGATA
AATCATATAGGGATTTCTATAAACTTATCTTTGAGGTCACCGAAGAAGATTGTAAACTTG
CAATTAAAAAATTCATTTCACCACTCTTTGATGATTCTACCTCTTTAATAGTTATCTATT
CTGAATCTGCCAGACTTGAATCTTTCAAAAAAACTTATCCAGATTTACAAATTGTTGATC
CAGAAACTTATTTTGTTTAAATTTTTTTTTTTAGTTTTCAAAGAAAATAAAAAAAATAAA
GAATAAAATAAAAAATACTAAATAAAATAAAATTCCTTTTTAAAAAAAAAACTGAAAATA
AAAAAATAAAAATAAAAATAAAAAT
sequence update 2000.10.12
Translated Amino Acid sequence 
XYDSVLENCYFDLIRGWVDKSYRDFYKLIFEVTEEDCKLAIKKFISPLFDDSTSLIVIYS
ESARLESFKKTYPDLQIVDPETYFV*ifffsfqrk*kk*rik*kilnkikflfkkktenk
kikikik
Translated Amino Acid sequence (All Frames) 
Frame A:
rxmiqfwkivtli*levglinhigisinlslrspkkivnlqlknsfhhslmilpl**lsi
lnlpdlnlskkliqiyklliqklilfkffflvfkenkknke*nkky*ik*nsflkkklki
kk*k*k*k


Frame B:
ex*fsfgklll*fn*rlg**ii*gfl*tyl*ghrrrl*tcn*kihfttl**fylfnsylf
*icqt*ifqknlsrftnc*srnlfclnfff*fskkikkiknkikntk*nkipf*kkn*k*
knknknkn


Frame C:
XYDSVLENCYFDLIRGWVDKSYRDFYKLIFEVTEEDCKLAIKKFISPLFDDSTSLIVIYS
ESARLESFKKTYPDLQIVDPETYFV*ifffsfqrk*kk*rik*kilnkikflfkkktenk
kikikik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC623 (VSC623Q) /CSM/VS/VSC6-A/VSC623Q.Seq.d/                        470   e-132
SSM273 (SSM273Q) /CSM/SS/SSM2-D/SSM273Q.Seq.d/                        428   e-119
VSG116 (VSG116Q) /CSM/VS/VSG1-A/VSG116Q.Seq.d/                         36   0.37
VFO833 (VFO833Q) /CSM/VF/VFO8-B/VFO833Q.Seq.d/                         36   0.37
VFL655 (VFL655Q) /CSM/VF/VFL6-C/VFL655Q.Seq.d/                         36   0.37
VFL455 (VFL455Q) /CSM/VF/VFL4-C/VFL455Q.Seq.d/                         36   0.37
VFK331 (VFK331Q) /CSM/VF/VFK3-B/VFK331Q.Seq.d/                         36   0.37
VFJ880 (VFJ880Q) /CSM/VF/VFJ8-D/VFJ880Q.Seq.d/                         36   0.37
VFJ823 (VFJ823Q) /CSM/VF/VFJ8-A/VFJ823Q.Seq.d/                         36   0.37
VFJ254 (VFJ254Q) /CSM/VF/VFJ2-C/VFJ254Q.Seq.d/                         36   0.37
own update 2004. 6. 2
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC068886|AC068886.2 Homo sapiens chromosome 3 clone RP11-502F18 map 3, WORKING DRAFT SEQUENCE, 31 unordered pieces.    44  0.23  4
AC026824|AC026824.2 Homo sapiens chromosome 3 clone RP11-648O5 map 3, WORKING DRAFT SEQUENCE, 21 unordered pieces.    44  1.2  1
AC141039|AC141039.1 Rattus norvegicus clone CH230-470E4, WORKING DRAFT SEQUENCE, 41 unordered pieces.    44  1.2  1
AC026989|AC026989.2 Homo sapiens chromosome 14 clone RP11-126B9 map 14, WORKING DRAFT SEQUENCE, 25 unordered pieces.    42  4.9  1
AC022373|AC022373.1 Homo sapiens chromosome 3p clone RP11-116m21, WORKING DRAFT SEQUENCE, 19 unordered pieces.    42  4.9  1
AL355332|AL355332.8 Human DNA sequence from clone RP11-390F23 on chromosome 10.    42  4.9  1
AC092957|AC092957.6 Homo sapiens 3 BAC RP11-635I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    36  6.1  2
B29420|B29420.1 F18O10TRC IGF Arabidopsis thaliana genomic clone F18O10, genomic survey sequence.    38  6.1  2
AY271310|AY271310.1 Shewanella sp. ANA-3 arsenic resistance operon, arsenate respiratory reductase operon, complete sequence; and Cds1 gene, complete cds.    42  7.2  2
AC117768|AC117768.3 Mus musculus clone RP24-511A23, WORKING DRAFT SEQUENCE, 6 unordered pieces.    36  7.6  5
dna update 2003. 9.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6FUF9) RecName: Full=Protein DML1;  &CR380952_150(CR380952|pid...    32   5.4
CP001080_558(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1...    32   7.1
AY714864_12(AY714864|pid:none) Uncultured archaeon GZfos35B7 clo...    32   9.3
BC158326_1(BC158326|pid:none) Xenopus tropicalis hypothetical pr...    32   9.3
protein update 2009. 3.20
PSORT 

 psg: 0.75  gvh: 0.53  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for VSC623 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSC623E
Full length Seq. 
>VSC623E.Seq
AGAANTATGATTCAGTTTTGGAAAATTGTTACTTTGATTTAATTAGAGGTTGGGTTGATA
AATCATATAGGGATTTCTATAAACTTATCTTTGAGGTCACCGAAGAAGATTGTAAACTTG
CAATTAAAAAATTCATTTCACCACTCTTTGATGATTCTACCTCTTTAATAGTTATCTATT
CTGAATCTGCCAGACTTGAATCTTTCAAAAAAACTTATCCAGATTTACAAATTGTTGATC
CAGAAACTTATTTTGTTTAAATTTTTTTTTTTAGTTTTCAAAGAAAATAAAAAAAATAAA
GAATAAAATAAAAAATACTAAATAAAATAAAATTCCTTTTTAAAAAAAAAACTGAAAATA
AAAAAATAAAAATAAAAATAAAAAT
Length of full length seq. 385