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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSC602
Library VS
(Link to library)
Clone ID VSC602
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15126-1
Original site URL
Representative seq. ID VSC602E
(Link to Original site)
Representative DNA sequence 
>VSC602 (VSC602Q) /CSM/VS/VSC6-A/VSC602Q.Seq.d/
AGAATTAAATGCTGCTATCCAAGCTGTTGCCAATCAAGGTAAAGCTAAATAAACATTAAA
AATAATAAAAAATATAAAAAAATAAAAAGAATATTTTTAATTTAAAAAAAAAAAAAAAAA
TTTCAACAATAAA
sequence update 2000.10.12
Translated Amino Acid sequence 
rikccypsccqsr*s*INIKNNKKYKKIKRIFLI*kkkkkfqq*
Translated Amino Acid sequence (All Frames) 
Frame A:
rikccypsccqsr*s*INIKNNKKYKKIKRIFLI*kkkkkfqq*


Frame B:
elnaaiqavanqgkak*tlkiiknikk*keyf*fkkkkknfnnk


Frame C:
n*mllskllpikvklnkh*k**ki*knkknifnlkkkkkisti
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH623 (VSH623Q) /CSM/VS/VSH6-A/VSH623Q.Seq.d/                         90   9e-18
VSE708 (VSE708Q) /CSM/VS/VSE7-A/VSE708Q.Seq.d/                         90   9e-18
VSC602 (VSC602Q) /CSM/VS/VSC6-A/VSC602Q.Seq.d/                         90   9e-18
FC-AK13 (FC-AK13Q) /CSM/FC/FC-AK/FC-AK13Q.Seq.d/                       90   9e-18
SFI170 (SFI170Q) /CSM/SF/SFI1-C/SFI170Q.Seq.d/                         32   1.8
SFG476 (SFG476Q) /CSM/SF/SFG4-D/SFG476Q.Seq.d/                         32   1.8
SFE879 (SFE879Q) /CSM/SF/SFE8-D/SFE879Q.Seq.d/                         32   1.8
SFC743 (SFC743Q) /CSM/SF/SFC7-B/SFC743Q.Seq.d/                         32   1.8
SFC387 (SFC387Q) /CSM/SF/SFC3-D/SFC387Q.Seq.d/                         32   1.8
CFI264 (CFI264Q) /CSM/CF/CFI2-C/CFI264Q.Seq.d/                         32   1.8
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC125551|AC125551.5 Rattus norvegicus clone CH230-7J22, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40  5.9  1
AC095806|AC095806.8 Rattus norvegicus clone CH230-9J24, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40  5.9  1
BY567504|BY567504.1 Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830205I23, 3' end partial sequence.    40  5.9  1
dna update 2003. 9.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54NE6) RecName: Full=Probable phosphoglycerate mutase;        ...    33   2.4
protein update 2009. 3.20
PSORT -
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSC602E
Full length Seq. 
>VSC602E.Seq
AGAATTAAATGCTGCTATCCAAGCTGTTGCCAATCAAGGTAAAGCTAAATAAACATTAAA
AATAATAAAAAATATAAAAAAATAAAAAGAATATTTTTAATTTAAAAAAAAAAAAAAAAA
TTTCAACAATAAA
Length of full length seq. 133