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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA269
Library AH
(Link to library)
Clone ID AHA269
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10794-1
Original site URL
Representative seq. ID AHA269P
(Link to Original site)
Representative DNA sequence 
>AHA269 (AHA269Q) /CSM/AH/AHA2-C/AHA269Q.Seq.d/
ATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTTATT
TTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACTCTT
ATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAAANG
GTCAATTTTACAATANATCAAATTCGTTCAATTATGGATCGCCGNGAAAATATCAAAAAT
ATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTCAA
AGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTCCA
NATNAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAAATG
CCAAAAGAXXXXXXXXXXCATTATCGTCAGACCTAACTGATGATATTGATAATGGTTTGG
TGGCTTTTAATCAAGATGTTAAAAGTCGTGCCAATTATCTCTATGATAAACATTCTTGGG
ATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGAATATAAGGGTCCAAATGTTT
TAGTTAACAAAACCAAAGGTGTTCAATATCTTCATGAAATTAAAGACTCTATGGTTTCAG
CATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAGAAAATGAGATCGATTCGTT
TCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCATAGAGGTAGTGGTCAATTTA
TTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATCAGCTCAACCAACACTTTTGG
AACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGGTATTAGTGGTATCTACTCTG
TACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGTCGTATTGGTACTCCATTAT
TCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGTCTCACTGCTGATTTACGTT
CAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGATCATTGGAGTTCAATTGGTA
TCGTTGGTCAAGATAAAANA
sequence update 2002.10.25
Translated Amino Acid sequence 
isiiniitytkqn**nlnfifplhwpnfnlplynysl*tliikihfknshf*kn*NKKKX
VNFTIXQIRSIMDRRENIKNMSVIAHVDHGKTTLTDSLIQRAGIIAXKVSGNAGYMSCRP
XXQLRGITIKSSSVSLHFEMPK---

---LSSDLTDDIDNGLVAFNQDVKSRANYLYDKHSWDKNDAVNIWSFGPEYKGPNVLVNK
TKGVQYLHEIKDSMVSAFQWISNEGVLCGEKMRSIRFNVYDVMLHADAIHRGSGQFIPTT
RRVMYASQLSAQPTLLEPMYLVDISTPESGISGIYSVLNRRRGVVIGEERRIGTPLFNIK
AYLPVMESFGLTADLRSSTAGQAFPQCVFDHWSSIGIVGQDKX
Translated Amino Acid sequence (All Frames) 
Frame A:
isiiniitytkqn**nlnfifplhwpnfnlplynysl*tliikihfknshf*kn*NKKKX
VNFTIXQIRSIMDRRENIKNMSVIAHVDHGKTTLTDSLIQRAGIIAXKVSGNAGYMSCRP
XXQLRGITIKSSSVSLHFEMPK---

---hyrqt*lmilimvwwllikmlkvvpiisminilgirmmqltfghlvqnirvqmf*lt
kpkvfnifmklktlwfqhsngsqmkvyyvvrk*drfvstfmm*cfmpmqfievvvnlfqq
lvv*cmppnyqlnqhfwnqciwlilvllkvvlvvstlysiveevlslvknvvlvlhysis
klifl*wnhlvslliyvqvllvklslnvfliigvqlvslvkik

Frame B:
yq**illhiqnkinkt*tlffpyigqtliclctiilfkllllkfilktliskktktkkkx
silqxikfvqlwiaxkiskicllllmlimvkllllih*fkelvllxirylvmqdichvvx
xnnyvvlp*shhlfhftlkcqk---

---iivrpn**y**wfggf*src*kscqlsl**tflg*e*cs*hlviwsri*gskcfs*q
nqrcsiss*n*rlygfsipmdlk*rcimw*eneidsfqrl*cnascrcns*r*wsiysnn
sscnvclptisstntfgtnvfg*y*ys*kwy*wyllctqs*krcchw*rtsywysiiqyq
slsscngiiwshc*ftfkycwssfpsmcf*slefnwyrwsr*x

Frame C:
innkyyyiyktkliklklyfsptlakl*fafvqlfslnsyy*nsf*klsflkklkqkkxg
qfynxsnsfnygspxkyqkyvcycsc*sw*nysy*finskswyycx*giw*criyvmssx
xtitwyyhkviicftsl*nakr---

---LSSDLTDDIDNGLVAFNQDVKSRANYLYDKHSWDKNDAVNIWSFGPEYKGPNVLVNK
TKGVQYLHEIKDSMVSAFQWISNEGVLCGEKMRSIRFNVYDVMLHADAIHRGSGQFIPTT
RRVMYASQLSAQPTLLEPMYLVDISTPESGISGIYSVLNRRRGVVIGEERRIGTPLFNIK
AYLPVMESFGLTADLRSSTAGQAFPQCVFDHWSSIGIVGQDKX
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA269 (AHA269Q) /CSM/AH/AHA2-C/AHA269Q.Seq.d/                       1733   0.0
VHP840 (VHP840Q) /CSM/VH/VHP8-B/VHP840Q.Seq.d/                       1308   0.0
VHN741 (VHN741Q) /CSM/VH/VHN7-B/VHN741Q.Seq.d/                       1308   0.0
VHK348 (VHK348Q) /CSM/VH/VHK3-B/VHK348Q.Seq.d/                       1308   0.0
VHB815 (VHB815Q) /CSM/VH/VHB8-A/VHB815Q.Seq.d/                       1308   0.0
VHB107 (VHB107Q) /CSM/VH/VHB1-A/VHB107Q.Seq.d/                       1308   0.0
SHG365 (SHG365Q) /CSM/SH/SHG3-C/SHG365Q.Seq.d/                       1308   0.0
CHS180 (CHS180Q) /CSM/CH/CHS1-D/CHS180Q.Seq.d/                       1308   0.0
AHN643 (AHN643Q) /CSM/AH/AHN6-B/AHN643Q.Seq.d/                       1308   0.0
AHM892 (AHM892Q) /CSM/AH/AHM8-D/AHM892Q.Seq.d/                       1308   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds.   129   2e-83  8
X15386|X15386.1 Dictyostelium discoideum H6 gene mRNA.            242   2e-64  2
BI863585|BI863585.1 kx46a06.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence.    66   1e-21  4
BI863575|BI863575.1 kx45h07.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CHICK Q90705 ELONGATION FACTOR 2 ;, mRNA sequence.    66   2e-18  3
BI451383|BI451383.1 kx23e09.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence.    66   2e-18  3
BM056853|BM056853.1 2154-85 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2154-85, mRNA sequence.    92   2e-14  1
BM058578|BM058578.1 2193-94 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2193-94, mRNA sequence.    90   8e-14  1
BM058379|BM058379.1 2191-29 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2191-29, mRNA sequence.    90   8e-14  1
AZ931993|AZ931993.1 474.dhz93a01.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz93a01.s1, DNA sequence.    82   2e-11  1
BM897769|BM897769.1 ph38h03.y1 Ostertagia ostertagi L4 pAMP1 v1 Ostertagia ostertagi cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence.    76   3e-11  2
dna update 2004. 2.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat...   257   5e-67
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote...   254   5e-66
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation...   253   6e-66
BC063919_1(BC063919|pid:none) Xenopus tropicalis eukaryotic tran...   253   6e-66
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088...   252   1e-65
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328...   252   1e-65
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio...   252   2e-65
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w...   252   2e-65
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w...   252   2e-65
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120...   252   2e-65
protein update 2009. 4.26
PSORT 

 psg: 0.80  gvh: 0.43  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for AHA269 is nuc
5' end seq. ID AHA269F
5' end seq. 
>AHA269F.Seq
ATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTTATT
TTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACTCTT
ATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAAANG
GTCAATTTTACAATANATCAAATTCGTTCAATTATGGATCGCCGNGAAAATATCAAAAAT
ATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTCAA
AGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTCCA
NATNAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAAATG
CCAAAAGANNNNNNNNNN
Length of 5' end seq. 438
3' end seq. ID AHA269Z
3' end seq. 
>AHA269Z.Seq
NNNNNNNNNNCATTATCGTCAGACCTAACTGATGATATTGATAATGGTTTGGTGGCTTTT
AATCAAGATGTTAAAAGTCGTGCCAATTATCTCTATGATAAACATTCTTGGGATAAGAAT
GATGCAGTTAACATTTGGTCATTTGGTCCAGAATATAAGGGTCCAAATGTTTTAGTTAAC
AAAACCAAAGGTGTTCAATATCTTCATGAAATTAAAGACTCTATGGTTTCAGCATTCCAA
TGGATCTCAAATGAAGGTGTATTATGTGGTGAGAAAATGAGATCGATTCGTTTCAACGTT
TATGATGTAATGCTTCATGCCGATGCAATTCATAGAGGTAGTGGTCAATTTATTCCAACA
ACTCGTCGTGTAATGTATGCCTCCCAACTATCAGCTCAACCAACACTTTTGGAACCAATG
TATTTGGTTGATATTAGTACTCCTGAAAGTGGTATTAGTGGTATCTACTCTGTACTCAAT
CGTAGAAGAGGTGTTGTCATTGGTGAAGAACGTCGTATTGGTACTCCATTATTCAATATC
AAAGCTTATCTTCCTGTAATGGAATCATTTGGTCTCACTGCTGATTTACGTTCAAGTACT
GCTGGTCAAGCTTTCCCTCAATGTGTTTTTGATCATTGGAGTTCAATTGGTATCGTTGGT
CAAGATAAAANA
Length of 3' end seq. 672
Connected seq. ID AHA269P
Connected seq. 
>AHA269P.Seq
ATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTTATT
TTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACTCTT
ATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAAANG
GTCAATTTTACAATANATCAAATTCGTTCAATTATGGATCGCCGNGAAAATATCAAAAAT
ATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTCAA
AGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTCCA
NATNAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAAATG
CCAAAAGA----------CATTATCGTCAGACCTAACTGATGATATTGATAATGGTTTGG
TGGCTTTTAATCAAGATGTTAAAAGTCGTGCCAATTATCTCTATGATAAACATTCTTGGG
ATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGAATATAAGGGTCCAAATGTTT
TAGTTAACAAAACCAAAGGTGTTCAATATCTTCATGAAATTAAAGACTCTATGGTTTCAG
CATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAGAAAATGAGATCGATTCGTT
TCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCATAGAGGTAGTGGTCAATTTA
TTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATCAGCTCAACCAACACTTTTGG
AACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGGTATTAGTGGTATCTACTCTG
TACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGTCGTATTGGTACTCCATTAT
TCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGTCTCACTGCTGATTTACGTT
CAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGATCATTGGAGTTCAATTGGTA
TCGTTGGTCAAGATAAAANA
Length of connected seq. 1090
Full length Seq ID -
Full length Seq. -
Length of full length seq. -