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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSC555
Library VS
(Link to library)
Clone ID VSC555
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14730-1
Original site URL
Representative seq. ID VSC555E
(Link to Original site)
Representative DNA sequence 
>VSC555 (VSC555Q) /CSM/VS/VSC5-C/VSC555Q.Seq.d/
AATAATTGTAATAATTAAGGTATGCACTGTCAAATCAATGAATTAGTGAACTCAAGTGGA
TCCAATTTTGGTGGTAGTGGTACATTTGATGGTGTTCCACAATTTGGTGGTCGTGGTGGT
TGGAGAGGATTTGGATTATGGAGNTAAAATCCTTTCAACAATTGTATTGCATCCTCTTTT
TTTATTTTTATTTATTTTTTCCAAAAAACATCGAAATAATCTTTTGTAAATAAAAAAAAA
AAAAAAAAAAAAACTGGTGCTTTTGGGAAAAAAAAAAAAAAAAAAAAAAGAAACATACAA
TAAACTATTATTTCTTTATATATTTTAACACTGTACAAAGAAATTAATCATTTAA
sequence update 2000.10. 5
Translated Amino Acid sequence 
iiviikvctvksmn**TQVDPILVVVVHLMVFHNLVVVVVGEDLDYGXKILSTIVLHPLF
LFLFIFSKKHRNNLL*ikkkkkkklvllgkkkkkkketynkllflyif*hctkklii*
Translated Amino Acid sequence (All Frames) 
Frame A:
nncnn*gmhcqinelvnssgsnfggsgtfdgvpqfggrggwrgfglwx*npfnnciassf
fifiyffqktsk*sfvnkkkkkkktgafgkkkkkkkrniq*tiislyiltlykeinhl


Frame B:
iiviikvctvksmn**TQVDPILVVVVHLMVFHNLVVVVVGEDLDYGXKILSTIVLHPLF
LFLFIFSKKHRNNLL*ikkkkkkklvllgkkkkkkketynkllflyif*hctkklii*


Frame C:
*l**lryalsnq*iselkwiqfww*wyi*wcstiwwswwleriwimexksfqqlycilff
yfylffpknieiifck*kkkkkknwcfwekkkkkkkkhtinyyffiyfntvqrn*sf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC555 (VSC555Q) /CSM/VS/VSC5-C/VSC555Q.Seq.d/                        343   1e-93
VHO752 (VHO752Q) /CSM/VH/VHO7-C/VHO752Q.Seq.d/                        303   9e-82
VFF658 (VFF658Q) /CSM/VF/VFF6-C/VFF658Q.Seq.d/                        303   9e-82
SSK246 (SSK246Q) /CSM/SS/SSK2-B/SSK246Q.Seq.d/                        295   2e-79
VSD638 (VSD638Q) /CSM/VS/VSD6-B/VSD638Q.Seq.d/                         40   0.022
VSD495 (VSD495Q) /CSM/VS/VSD4-D/VSD495Q.Seq.d/                         40   0.022
SLA475 (SLA475Q) /CSM/SL/SLA4-D/SLA475Q.Seq.d/                         38   0.087
SFI764 (SFI764Q) /CSM/SF/SFI7-C/SFI764Q.Seq.d/                         38   0.087
SFG629 (SFG629Q) /CSM/SF/SFG6-B/SFG629Q.Seq.d/                         38   0.087
SFE114 (SFE114Q) /CSM/SF/SFE1-A/SFE114Q.Seq.d/                         38   0.087
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC135543|AC135543.2 Takifugu rubripes clone 195I19, WORKING DRAFT SEQUENCE, 6 ordered pieces.    46  0.29  1
AC068977|AC068977.3 Homo sapiens chromosome 13 clone RP11-809O8, WORKING DRAFT SEQUENCE, 19 unordered pieces.    46  0.29  1
AF436027|AF436027.1 Neotrypaea californiensis 12S ribosomal RNA gene, partial sequence; tRNA-Ile, tRNA-Gln, and tRNA-Asp genes, complete sequence; and tRNA-Met gene, partial sequence; mitochondrial genes for mitochondrial products.    38  0.84  2
AG221940|AG221940.1 Lotus corniculatus var. japonicus DNA, clone:LjB06f15_f.    44  1.1  1
AC098194|AC098194.8 Rattus norvegicus clone CH230-85B14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  1.1  1
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    44  1.1  1
AL450388|AL450388.13 Human DNA sequence from clone RP11-292F22 on chromosome 10.    36  1.4  2
B66191|B66191.1 CIT-HSP-2024G16.TF CIT-HSP Homo sapiens genomic clone 2024G16, genomic survey sequence.    36  1.5  2
AC109455|AC109455.2 Homo sapiens chromosome 5 clone RP11-221D10, complete sequence.    42  3.6  6
AX251535|AX251535.1 Sequence 503 from Patent WO0168912.           42  4.0  2
dna update 2003. 9.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY056469_1(AY056469|pid:none) Petromyzon marinus homeobox protei...    32   5.5
AL031745_47(AL031745|pid:none) Plasmodium falciparum DNA from MA...    32   5.5
(A4ZNR4) RecName: Full=Protein naked cuticle homolog 2;         ...    32   9.3
(A4ZNR5) RecName: Full=Protein naked cuticle homolog 2-like;    ...    32   9.3
protein update 2009. 3.20
PSORT 

 psg: 0.75  gvh: 0.62  alm: 0.19  top: 0.33  tms: 0.13  mit: 0.16  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSC555 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSC555E
Full length Seq. 
>VSC555E.Seq
AATAATTGTAATAATTAAGGTATGCACTGTCAAATCAATGAATTAGTGAACTCAAGTGGA
TCCAATTTTGGTGGTAGTGGTACATTTGATGGTGTTCCACAATTTGGTGGTCGTGGTGGT
TGGAGAGGATTTGGATTATGGAGNTAAAATCCTTTCAACAATTGTATTGCATCCTCTTTT
TTTATTTTTATTTATTTTTTCCAAAAAACATCGAAATAATCTTTTGTAAATAAAAAAAAA
AAAAAAAAAAAAACTGGTGCTTTTGGGAAAAAAAAAAAAAAAAAAAAAAGAAACATACAA
TAAACTATTATTTCTTTATATATTTTAACACTGTACAAAGAAATTAATCATTTAA
Length of full length seq. 355