>VSC519 (VSC519Q) /CSM/VS/VSC5-A/VSC519Q.Seq.d/
XXXXXXXXXXAAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTTATTGGA
ATTGGAGTTTTGAAAACCAATGATTTAGTAATCACCTTCAAATCAATTTGCAATGTTAGT
GATAATGCAAACTTTGATTTCATTAAAATTTTACCATCACCAGGTGTACTCACTTTAGCC
TCTAGAATCAATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGATTAAA
GAAGTCTTGGGTAATGATTGGACTTATGATGAATCTTCAATCGAACAAGTTTATCCAAAA
TTAGAAGAAAATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATC
AGTCAAAATATCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGTTGAA
GCAACTCAAAATTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAGTTCTTATTGGGTT
TGGAAATTCGATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGTAATACTAGTGAT
AATGCAAATTTCAATTTTGAAGCTCTCCTTTAAAATTAATGAAAAAAATAAA

---MQRLFSVTMPKQTVIGIGVLKTNDLVITFKSICNVSDNANFDFIKILPSPGVLTLAS
RINLRENQEKINESFEKIKEVLGNDWTYDESSIEQVYPKLEENNKPRVGDVFAEIIRYIS
QNIVKRCKDDDMVKEGFVEATQNCKIVFQFVEKQSSYWVWKFDGGNLVVSFKSICNTSDN
ANFNFEALL*n**kk*

Frame A:
---nakivfrhnakangywnwsfenq*fsnhlqinlqc***ckl*fh*nftitrcthfsl
*nqferesrenq*ifrkd*rslg**ldl**ifnrtslskirrk**ttcw*clc*nhslhq
skyr*km*r**ygqrrfr*snskl*nrlpic*ktkfllgleirww*fsriiqinl*y***
ckfqf*ssplklmkki


Frame B:
---MQRLFSVTMPKQTVIGIGVLKTNDLVITFKSICNVSDNANFDFIKILPSPGVLTLAS
RINLRENQEKINESFEKIKEVLGNDWTYDESSIEQVYPKLEENNKPRVGDVFAEIIRYIS
QNIVKRCKDDDMVKEGFVEATQNCKIVFQFVEKQSSYWVWKFDGGNLVVSFKSICNTSDN
ANFNFEALL*n**kk*


Frame C:
---ckdcfpsqcqskrllelef*kpmi**spsnqfamlvimqtlislkfyhhqvysl*pl
esi*erikrksmnlskrlkkswvmiglmmnlqsnkfiqn*kkiinhvlvmsllksfvtsv
kislkdvkmmiwskkvslkqlkivksssnllknkvligfgnsmvvi*syhsnqfvilvim
qisilklsfkineknk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC519 (VSC519Q) /CSM/VS/VSC5-A/VSC519Q.Seq.d/                       1132   0.0
VSA563 (VSA563Q) /CSM/VS/VSA5-C/VSA563Q.Seq.d/                       1116   0.0
VHP457 (VHP457Q) /CSM/VH/VHP4-C/VHP457Q.Seq.d/                       1112   0.0
VHO859 (VHO859Q) /CSM/VH/VHO8-C/VHO859Q.Seq.d/                       1112   0.0
VHO667 (VHO667Q) /CSM/VH/VHO6-C/VHO667Q.Seq.d/                       1112   0.0
VHO513 (VHO513Q) /CSM/VH/VHO5-A/VHO513Q.Seq.d/                       1112   0.0
VHO177 (VHO177Q) /CSM/VH/VHO1-D/VHO177Q.Seq.d/                       1112   0.0
VHM271 (VHM271Q) /CSM/VH/VHM2-C/VHM271Q.Seq.d/                       1112   0.0
VHL229 (VHL229Q) /CSM/VH/VHL2-B/VHL229Q.Seq.d/                       1112   0.0
VHK845 (VHK845Q) /CSM/VH/VHK8-B/VHK845Q.Seq.d/                       1112   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AV869558|AV869558.1 Ciona intestinalis cDNA, clone:rcieg55b14, 3' end, single read.    48  0.12  1
AQ512826|AQ512826.1 HS_5141_B1_B07_SP6E RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=717 Col=13 Row=D, DNA sequence.    42  0.26  2
AQ485477|AQ485477.1 RPCI-11-249N3.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-249N3, genomic survey sequence.    42  0.32  2
AC098590|AC098590.3 Homo sapiens BAC clone RP11-324J13 from 4, complete sequence.    42  0.71  4
Z75710|Z75710.1 Caenorhabditis elegans cosmid D1081.              38  0.76  3
AC027458|AC027458.4 Homo sapiens chromosome 18, clone RP11-723G8, complete sequence.    40  0.89  3
AC116697|AC116697.4 Mus musculus clone RP24-444C12, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40  0.90  3
AC007112|AC007112.6 Arabidopsis thaliana chromosome 2 clone F24C20 map mi398, complete sequence.    38  1.0  3
AC123242|AC123242.4 Rattus norvegicus clone CH230-29I6, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40  1.4  3
BZ493212|BZ493212.1 BONKJ18TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONKJ18, DNA sequence.    40  1.7  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_29(AC117081|pid:none) Dictyostelium discoideum chromoso...   126   4e-28
AC117081_21(AC117081|pid:none) Dictyostelium discoideum chromoso...   125   5e-28
AL844502_159(AL844502|pid:none) Plasmodium falciparum 3D7 chromo...    43   0.007
CP001581_3540(CP001581|pid:none) Clostridium botulinum A2 str. K...    37   0.32
AF206632_1(AF206632|pid:none) Plasmodium falciparum isolate FCC1...    37   0.41
AL031745_13(AL031745|pid:none) Plasmodium falciparum DNA from MA...    36   0.70
AJ248284_9(AJ248284|pid:none) Pyrococcus abyssi complete genome;...    36   0.92
CP000962_788(CP000962|pid:none) Clostridium botulinum A3 str. Lo...    36   0.92
AM412317_766(AM412317|pid:none) Clostridium botulinum A str. ATC...    35   1.2
CR940352_38(CR940352|pid:none) Theileria annulata strain Ankara ...    35   1.2

 psg: 0.93  gvh: 0.45  alm: 0.39  top: 0.47  tms: 0.00  mit: 0.37  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 20.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for VSC519 is cyt

>VSC519Z.Seq
----------AAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTTATTGGA
ATTGGAGTTTTGAAAACCAATGATTTAGTAATCACCTTCAAATCAATTTGCAATGTTAGT
GATAATGCAAACTTTGATTTCATTAAAATTTTACCATCACCAGGTGTACTCACTTTAGCC
TCTAGAATCAATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGATTAAA
GAAGTCTTGGGTAATGATTGGACTTATGATGAATCTTCAATCGAACAAGTTTATCCAAAA
TTAGAAGAAAATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATC
AGTCAAAATATCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGTTGAA
GCAACTCAAAATTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAGTTCTTATTGGGTT
TGGAAATTCGATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGTAATACTAGTGAT
AATGCAAATTTCAATTTTGAAGCTCTCCTTTAAAATTAATGAAAAAAATAAA