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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSC512
Library VS
(Link to library)
Clone ID VSC512
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12183-1
Original site URL
Representative seq. ID VSC512Z
(Link to Original site)
Representative DNA sequence 
>VSC512 (VSC512Q) /CSM/VS/VSC5-A/VSC512Q.Seq.d/
XXXXXXXXXXCCAAGGGCAATCGGTATCGCTGAAAGATTTTGGTCTGCTCAAAGTTTTAA
CTCTGTCTCTTTAGCACTCCCACGTATTGGTCATTTTACTTGTGATCTCTCACGTCGTGG
TATTCAATCTGGNCCATTTTTCCCAGAATATTGNCCAATGCAAGATGATTTGGTTTTCAC
TTTGAAACCAAATACTAAACTTTCAAAATCTGAAATTAAATTAATTTTAAGTAAATAAAT
AAATAAATTTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
sequence update 2000.10. 5
Translated Amino Acid sequence 
---RAIGIAERFWSAQSFNSVSLALPRIGHFTCDLSRRGIQSGPFFPEYXPMQDDLVFTL
KPNTKLSKSEIKLILSK*inkfkikkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---qgqsvslkdfgllkvltlsl*hshvlvillvishvvvfnlxhfsqnixqckmiwfsl
*nqilnfqnlkln*f*vnk*inlk*kkkkkkkkkkkkkkkkk


Frame B:
---kgnryr*kilvcskf*lclfstptywsfyl*sltswysiwxifprilxnar*fgfhf
etky*tfki*n*infk*ink*i*nkkkkkkkkkkkkkkkkk


Frame C:
---RAIGIAERFWSAQSFNSVSLALPRIGHFTCDLSRRGIQSGPFFPEYXPMQDDLVFTL
KPNTKLSKSEIKLILSK*inkfkikkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC512 (VSC512Q) /CSM/VS/VSC5-A/VSC512Q.Seq.d/                        355   2e-97
VSB886 (VSB886Q) /CSM/VS/VSB8-D/VSB886Q.Seq.d/                        307   5e-83
VFI752 (VFI752Q) /CSM/VF/VFI7-C/VFI752Q.Seq.d/                        301   3e-81
VSB414 (VSB414Q) /CSM/VS/VSB4-A/VSB414Q.Seq.d/                        299   1e-80
SLJ333 (SLJ333Q) /CSM/SL/SLJ3-B/SLJ333Q.Seq.d/                        297   5e-80
VHI640 (VHI640Q) /CSM/VH/VHI6-B/VHI640Q.Seq.d/                        234   6e-61
VFI337 (VFI337Q) /CSM/VF/VFI3-B/VFI337Q.Seq.d/                        234   6e-61
VFJ394 (VFJ394Q) /CSM/VF/VFJ3-D/VFJ394Q.Seq.d/                        226   2e-58
VFN145 (VFN145Q) /CSM/VF/VFN1-B/VFN145Q.Seq.d/                        218   4e-56
VHI840 (VHI840Q) /CSM/VH/VHI8-B/VHI840Q.Seq.d/                        216   1e-55
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

J04065|J04065.1 D.discoideum beta-N-acetylhexosaminidase (nagA) mRNA, complete cds.   307  4e-80  1
AC024506|AC024506.3 Homo sapiens chromosome 6 clone RP11-152M12 map 6, WORKING DRAFT SEQUENCE, 20 unordered pieces.    36  3.4  3
CC811246|CC811246.1 ZMMBBc0480N20f ZMMBBc Zea mays subsp. mays genomic clone ZMMBBc0480N20 5', genomic survey sequence.    42  3.9  1
AL450343|AL450343.4 Human DNA sequence from clone RP11-152M12 on chromosome 6.    36  9.2  2
AC146080|AC146080.1 Pan troglodytes chromosome UNK clone RP43-51K11, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.    40     15  1
AC117641|AC117641.3 Mus musculus clone RP23-230C10, WORKING DRAFT SEQUENCE, 8 ordered pieces.    40     15  1
AC014106|AC014106.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    40     15  1
AC073065|AC073065.6 Homo sapiens BAC clone RP11-149O3 from 2, complete sequence.    40     15  1
AL023807|AL023807.6 Human DNA sequence from clone RP3-525L6 on chromosome 6p22.3-23 Contains CA repeat, STSs, GSSs and a CpG Island.    40     15  1
AC010050|AC010050.4 Drosophila melanogaster chromosome 3L/71F1 clone RPCI98-21K15, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces.    40     15  1
dna update 2003. 8.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P13723) RecName: Full=Beta-hexosaminidase subunit A1;          ...   120   2e-26
(Q54SC9) RecName: Full=Beta-hexosaminidase subunit A2;          ...    89   5e-17
(Q0V8R6) RecName: Full=Beta-hexosaminidase subunit alpha;       ...    49   4e-05
AK075895_1(AK075895|pid:none) Mus musculus adult male tongue cDN...    48   1e-04
AK159091_1(AK159091|pid:none) Mus musculus osteoclast-like cell ...    48   1e-04
AK151960_1(AK151960|pid:none) Mus musculus bone marrow macrophag...    48   1e-04
(P29416) RecName: Full=Beta-hexosaminidase subunit alpha;       ...    48   1e-04
AK168186_1(AK168186|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK...    48   1e-04
AK159890_1(AK159890|pid:none) Mus musculus osteoclast-like cell ...    48   1e-04
EU579459_1(EU579459|pid:none) Ovis aries hexosaminidase A alpha ...    48   1e-04
protein update 2009. 3.20
PSORT 

 psg: 0.86  gvh: 0.55  alm: 0.50  top: 0.47  tms: 0.00  mit: 0.36  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for VSC512 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSC512Z
3' end seq. 
>VSC512Z.Seq
----------CCAAGGGCAATCGGTATCGCTGAAAGATTTTGGTCTGCTCAAAGTTTTAA
CTCTGTCTCTTTAGCACTCCCACGTATTGGTCATTTTACTTGTGATCTCTCACGTCGTGG
TATTCAATCTGGNCCATTTTTCCCAGAATATTGNCCAATGCAAGATGATTTGGTTTTCAC
TTTGAAACCAAATACTAAACTTTCAAAATCTGAAATTAAATTAATTTTAAGTAAATAAAT
AAATAAATTTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
Length of 3' end seq. 298
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -