>VSC485 (VSC485Q) /CSM/VS/VSC4-D/VSC485Q.Seq.d/
XXXXXXXXXXTGCTCAGCTGTTCCAGGTGGTCAAATTGTTGATACCGTTTGCGACTTATT
ATGCGATTATGTTGGCGTTGATGAATTTATTAAACTCATTTCAGATGTTGACCCAGATCC
AATTTACATTTGTGAAAAGATCAGTGTTTGCAAAACCAACGATAACGCAGCTGCTTCATT
AGATTTAGTTCAAATTAACCCACAAAACGGTACTGTCGGTGGAACATTCACCCTCTCAAT
TGCTTACACTGTTACCAACACCATCGCCACTGGTCAATTAGCTTTCAATATCATCGATCC
AACCGGTAATGCTTTTGGTGATGCCGTTTTATTAGTTCAACAATCACCAGAACAATACAC
CCAACAATTCCAATTCCAAGCTACCCCATCAGAACAAGAATCATTCCCAAATGGTTTATA
CACTGTCCAAGCTCTCGTTTGTGAAGGTTCATGTGGTTCACCACATCCAAACACTTACAC
TCTTGCCAACGGTACCACCACTTTCACCATCTCTGGTGCTGATTCTTCATCAATGTCTGG
TGCTGGTTCTTTCTCTGGTTCTTCCCAATCAACCCAAACTGGTGCCGCCTCTGGTTCAGG
TTCAGGTTTTGCTTTATTTTAAAAAAATACTTATTAAAATAAATATTTAATTTTATAATT
TTTTATTTAATTCTATAAAAAA

---SAVPGGQIVDTVCDLLCDYVGVDEFIKLISDVDPDPIYICEKISVCKTNDNAAASLD
LVQINPQNGTVGGTFTLSIAYTVTNTIATGQLAFNIIDPTGNAFGDAVLLVQQSPEQYTQ
QFQFQATPSEQESFPNGLYTVQALVCEGSCGSPHPNTYTLANGTTTFTISGADSSSMSGA
GSFSGSSQSTQTGAASGSGSGFALF*knty*nkylil*ffi*fykk

Frame A:
---aqlfqvvkllipfatyyaimlalmnllnsfqmltqiqftfvkrsvfakptitqllh*
i*fklthktvlsvehspsqlltllptpsplvn*lsissiqpvmllvmpfy*fnnhqnntp
nnsnsklphqnknhsqmvytlsklsfvkvhvvhhiqtltllptvpplspslvlilhqclv
lvlslvlpnqpklvpplvqvqvllyfkkilikini*fynflfnsik


Frame B:
---lscsrwsnc*yrlrlimrlcwr**iy*thfrc*prsnlhl*kdqclqnqr*rscfir
fssn*ptkrycrwnihplnclhcyqhhrhwsisfqyhrsnr*cfw*crfisstitrtihp
tipipsypirtriipkwfihcpssrl*rfmwfttskhlhscqryhhfhhlwc*ffinvwc
wfflwffpinpnwcrlwfrfrfcfilkkyllk*ifnfiifylil*k


Frame C:
---SAVPGGQIVDTVCDLLCDYVGVDEFIKLISDVDPDPIYICEKISVCKTNDNAAASLD
LVQINPQNGTVGGTFTLSIAYTVTNTIATGQLAFNIIDPTGNAFGDAVLLVQQSPEQYTQ
QFQFQATPSEQESFPNGLYTVQALVCEGSCGSPHPNTYTLANGTTTFTISGADSSSMSGA
GSFSGSSQSTQTGAASGSGSGFALF*knty*nkylil*ffi*fykk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC485 (VSC485Q) /CSM/VS/VSC4-D/VSC485Q.Seq.d/                       1193   0.0
FC-AA21 (FC-AA21Q) /CSM/FC/FC-AA/FC-AA21Q.Seq.d/                     1193   0.0
FC-020 (FC-020Q) /CSM/CG/CG-FC/FC-020Q.Seq.d/                        1193   0.0
VSI490 (VSI490Q) /CSM/VS/VSI4-D/VSI490Q.Seq.d/                       1179   0.0
VSF151 (VSF151Q) /CSM/VS/VSF1-C/VSF151Q.Seq.d/                       1179   0.0
VSJ484 (VSJ484Q) /CSM/VS/VSJ4-D/VSJ484Q.Seq.d/                       1172   0.0
SLE884 (SLE884Q) /CSM/SL/SLE8-D/SLE884Q.Seq.d/                       1170   0.0
VSF843 (VSF843Q) /CSM/VS/VSF8-B/VSF843Q.Seq.d/                       1152   0.0
FC-BO02 (FC-BO02Q) /CSM/FC/FC-BO/FC-BO02Q.Seq.d/                     1126   0.0
SSD491 (SSD491Q) /CSM/SS/SSD4-D/SSD491Q.Seq.d/                       1122   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF140780|AF140780.1 Dictyostelium discoideum countin gene, complete cds.  1193  0.0  1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1193  0.0  1
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    54  1e-05  3
AJ251114|AJ251114.1 Mucor circinelloides f. lusitanicus odc gene for ornithine decarboxylase, exons 1-2.    42  0.11  2
AB044520|AB044520.1 Gonium octonarium chloroplast psbC gene for photosystem II CP43 apoprotein, strain:GO-LC-1+.    40  0.60  2
Z93379|Z93379.1 Caenorhabditis elegans cosmid F21H7.              42  8.9  1
AC113036|AC113036.4 Mus musculus clone RP23-223B10, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42  8.9  1
BH487734|BH487734.1 BOHGG09TR BOHG Brassica oleracea genomic clone BOHGG09, DNA sequence.    42  8.9  1
AC006919|AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.    42     63  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86IV5) RecName: Full=Countin-1; Flags: Precursor;  &AC116986_1...   343   3e-93
AF140780_1(AF140780|pid:none) Dictyostelium discoideum countin g...   343   3e-93
(Q86HV8) RecName: Full=Countin-3; Flags: Precursor;  &AB211530_1...   178   2e-43
(Q8WSR7) RecName: Full=Countin-2; Flags: Precursor;  &AB067573_1...   161   2e-38
(Q554K2) RecName: Full=Countin-like protein; Flags: Precursor;         93   7e-18
AC116956_1(AC116956|pid:none) Dictyostelium discoideum chromosom...    93   7e-18
CP000682_1469(CP000682|pid:none) Metallosphaera sedula DSM 5348,...    38   0.25
CP000269_2685(CP000269|pid:none) Janthinobacterium sp. Marseille...    37   0.73
AF082528_1(AF082528|pid:none) Entamoeba dispar strain SAW 142 po...    35   1.6
(Q24824) RecName: Full=Pore-forming peptide ameobapore B; AltNam...    35   2.1

 psg: 0.75  gvh: 0.34  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VSC485 is cyt

>VSC485Z.Seq
----------TGCTCAGCTGTTCCAGGTGGTCAAATTGTTGATACCGTTTGCGACTTATT
ATGCGATTATGTTGGCGTTGATGAATTTATTAAACTCATTTCAGATGTTGACCCAGATCC
AATTTACATTTGTGAAAAGATCAGTGTTTGCAAAACCAACGATAACGCAGCTGCTTCATT
AGATTTAGTTCAAATTAACCCACAAAACGGTACTGTCGGTGGAACATTCACCCTCTCAAT
TGCTTACACTGTTACCAACACCATCGCCACTGGTCAATTAGCTTTCAATATCATCGATCC
AACCGGTAATGCTTTTGGTGATGCCGTTTTATTAGTTCAACAATCACCAGAACAATACAC
CCAACAATTCCAATTCCAAGCTACCCCATCAGAACAAGAATCATTCCCAAATGGTTTATA
CACTGTCCAAGCTCTCGTTTGTGAAGGTTCATGTGGTTCACCACATCCAAACACTTACAC
TCTTGCCAACGGTACCACCACTTTCACCATCTCTGGTGCTGATTCTTCATCAATGTCTGG
TGCTGGTTCTTTCTCTGGTTCTTCCCAATCAACCCAAACTGGTGCCGCCTCTGGTTCAGG
TTCAGGTTTTGCTTTATTTTAAAAAAATACTTATTAAAATAAATATTTAATTTTATAATT
TTTTATTTAATTCTATAAAAAA