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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA261
Library AH
(Link to library)
Clone ID AHA261
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15718-1
Original site URL
Representative seq. ID AHA261P
(Link to Original site)
Representative DNA sequence 
>AHA261 (AHA261Q) /CSM/AH/AHA2-C/AHA261Q.Seq.d/
TTATAAATAAATAATGATGAAATATATATATATTTTATTAATATTTTCTTTATTGTTTTT
GAAAATAAATTCACAAAATACAATTTTGTTGAATGCATTAATTTATGATCAAACTCCATC
AAGAAATAATGATTTTCAAATTCCTTCTCCAGGAGGTATTGCAAAAGGGTTAGTAAAATC
TAATTTAGGTTCTGATAATACACCAGTTTTAGTGGCTGAGCGATCATCAACAATTCATTC
ACCAGAAACTTTTAATCAATGGTTTCACAATTATCCAGGAGTAAATTTACCAATTAATTA
TCAAATTACTTTAACTCAAAGTACTACAAATCCAAATGTTTATGCATATACAAATGATGC
CTTTTTTCCAATAGATGGACAAGGATTTGATAATAAGACAAATTATCCATATGAAGCCGT
ATATAGAGATGAACGTGGAACACCACATAATTTTCACTTTTGTTTGCAAATTCACTCAAT
GTTTGCATATAAGAAAGGTGATACTTTCTATTTTAATGGTGATGATGATGTTTGGGTATT
TATGAATAAAATATTAGTTGTTGATTTGGGAGGAATTCACGGTAAAGCAACAACAAGTAT
TAATTTGGATAGATTAGGTTTGACTGAGGGCACCAATTATCCAXXXXXXXXXXTACAATT
ATACTGAATCAACATGTGATGACAATGATGCTTGTACTTCAGATGTATGTACAGAATATG
GTTGTGAGCATTATACATATACTGGTTGTATGAATTGTACTAATGGAGGTTGTTTCACTA
CTCCAGATACATGTAATCATTATGGTTGTAATTTCACTGGTGATGGTAAATGCTTCTTCA
CTCATTTAGAATGTGATGATAATGACCCATGTACTAAAGATCATTGCTTATATTCTGGGG
ATTGTTATTATGAAAAACTTACCAATTGTACAACCCCAACCCCAACTCAAACTCCTCCTC
CAACTCAAACTCCTACTAATCATTCTATTGGTGTTAATGAATGCGATTGTTGCCCTGAAG
GTCAATATTGTTTATTGATTTTTGGACATGAAAGATGTTTCATTGCAAATGATGGTGGTG
ACGGTATTCCAGAGGAAACTATTGGTTGTCCTGGTGTAACAACTGGTACACCAACATCAA
CAGATGGTGGTACAGGTCACTACACTGAATCAGGTACAGGTAATCCACATTTATGTGATA
GACATCATTGTAGGAGTGGAATGGAATGTCATGTTATTAATGGAATTCCAGAATGTTTAC
CATCAAAATACAAATGTTTAGATTGTTTAGATCTTCATTGTGAAAAACAAGGTGGAAAAA
CATGTTTTACCATTGAAAATCAAAATTATAAACCAAATATTAAAGGATGTAAAGATGATT
CTTGTTGTAAATATACTCCAACTTGTAGATAATAATCAAAATTTTTAAAATAAATAATAT
sequence update 2002.10.25
Translated Amino Acid sequence 
yk*IMMKYIYILLIFSLLFLKINSQNTILLNALIYDQTPSRNNDFQIPSPGGIAKGLVKS
NLGSDNTPVLVAERSSTIHSPETFNQWFHNYPGVNLPINYQITLTQSTTNPNVYAYTNDA
FFPIDGQGFDNKTNYPYEAVYRDERGTPHNFHFCLQIHSMFAYKKGDTFYFNGDDDVWVF
MNKILVVDLGGIHGKATTSINLDRLGLTEGTNYP---

---YNYTESTCDDNDACTSDVCTEYGCEHYTYTGCMNCTNGGCFTTPDTCNHYGCNFTGD
GKCFFTHLECDDNDPCTKDHCLYSGDCYYEKLTNCTTPTPTQTPPPTQTPTNHSIGVNEC
DCCPEGQYCLLIFGHERCFIANDGGDGIPEETIGCPGVTTGTPTSTDGGTGHYTESGTGN
PHLCDRHHCRSGMECHVINGIPECLPSKYKCLDCLDLHCEKQGGKTCFTIENQNYKPNIK
GCKDDSCCKYTPTCR**skflk*ii
Translated Amino Acid sequence (All Frames) 
Frame A:
l*inndeiyiyfiniffivfenkftkynfvecinl*snsikk**fsnsfsrryckrvski
*frf**ytsfsg*aiinnsftrnf*smvsqlsrskftn*lsnyfnskyykskclciyk*c
lfsnrwtri***dklsi*sri*r*twntt*fsllfanslnvci*er*yflf*w***clgi
ye*nisc*fgrnsr*snnky*fg*irfd*ghqls---

---YNYTESTCDDNDACTSDVCTEYGCEHYTYTGCMNCTNGGCFTTPDTCNHYGCNFTGD
GKCFFTHLECDDNDPCTKDHCLYSGDCYYEKLTNCTTPTPTQTPPPTQTPTNHSIGVNEC
DCCPEGQYCLLIFGHERCFIANDGGDGIPEETIGCPGVTTGTPTSTDGGTGHYTESGTGN
PHLCDRHHCRSGMECHVINGIPECLPSKYKCLDCLDLHCEKQGGKTCFTIENQNYKPNIK
GCKDDSCCKYTPTCR**skflk*ii

Frame B:
yk*IMMKYIYILLIFSLLFLKINSQNTILLNALIYDQTPSRNNDFQIPSPGGIAKGLVKS
NLGSDNTPVLVAERSSTIHSPETFNQWFHNYPGVNLPINYQITLTQSTTNPNVYAYTNDA
FFPIDGQGFDNKTNYPYEAVYRDERGTPHNFHFCLQIHSMFAYKKGDTFYFNGDDDVWVF
MNKILVVDLGGIHGKATTSINLDRLGLTEGTNYP---

---tiilnqhvmtmmlvlqmyvqnmvvsiihilvv*ivlmevvsllqihviimvvislvm
vnassli*nvmimthvlkiiayilgivimknlpivqpqpqlklllqlkllliillvlmna
ivalkvnivy*fldmkdvslqmmvvtvfqrkllvvlv*qlvhqhqqmvvqvttlnqvqvi
hiyvidiivgvewnvmllmefqnvyhqntnv*iv*ifivknkvekhvlplkikiinqilk
dvkmilvvnilqlvdnnqnf*nk*y

Frame C:
ink***niyify*yflycf*k*ihkiqfc*mh*fmiklhqeimifkfllqevlqkg**nl
i*vliihqf*wlsdhqqfihqkllingftiiqe*iyqliikll*lkvlqiqmfmhiqmmp
ffq*mdkdliirqiihmkpyiemnvehhiiftfvckftqclhirkvilsilmvmmmfgyl
*iky*lliweeftvkqqqvliwid*v*lrapii---

---qly*inm**q*clyfrcmyriwl*alyiywlyely*wrlfhysrym*slwl*fhw*w
*mllhsfrm****pmy*rsllifwglll*ktyqlynpnpnsnsssnsnsy*sfywc**mr
llp*rsilfidfwt*kmfhck*ww*rysrgnywlswcnnwytninrwwyrslh*iryr*s
tfm**tsl*ewngmscy*wnsrmftikiqmfrlfrssl*ktrwknmfyh*kskl*tky*r
m*r*fll*iysnl*iiikifkinn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA261 (AHA261Q) /CSM/AH/AHA2-C/AHA261Q.Seq.d/                       2676   0.0
AHO161 (AHO161Q) /CSM/AH/AHO1-C/AHO161Q.Seq.d/                       1560   0.0
AHC284 (AHC284Q) /CSM/AH/AHC2-D/AHC284Q.Seq.d/                       1560   0.0
AHO411 (AHO411Q) /CSM/AH/AHO4-A/AHO411Q.Seq.d/                       1548   0.0
AHL540 (AHL540Q) /CSM/AH/AHL5-B/AHL540Q.Seq.d/                       1546   0.0
AHK303 (AHK303Q) /CSM/AH/AHK3-A/AHK303Q.Seq.d/                       1542   0.0
AHE261 (AHE261Q) /CSM/AH/AHE2-C/AHE261Q.Seq.d/                       1542   0.0
SHG812 (SHG812Q) /CSM/SH/SHG8-A/SHG812Q.Seq.d/                       1540   0.0
AHH101 (AHH101Q) /CSM/AH/AHH1-A/AHH101Q.Seq.d/                       1540   0.0
AHM141 (AHM141Q) /CSM/AH/AHM1-B/AHM141Q.Seq.d/                       1536   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB053203|AB053203.1 Dictyostelium discoideum psiA mRNA for Psi facor, complete cds.    68   7e-11  5
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            38   2e-07  27
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    52   9e-07  11
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    38   1e-05  15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   2e-05  17
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   3e-04  17
BG520436|BG520436.1 ps16d04.y2 Trichinella spiralis ML CMVsport jasmer Trichinella spiralis cDNA 5', mRNA sequence.    38   4e-04  2
BG322108|BG322108.1 ps16d04.y1 Trichinella spiralis ML CMVsport jasmer Trichinella spiralis cDNA 5', mRNA sequence.    38   4e-04  2
AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    58   4e-04  1
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    58   4e-04  12
dna update 2004. 2.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                499   e-140
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                261   3e-68
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                194   1e-54
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                181   7e-44
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell...   152   4e-35
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                151   5e-35
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   140   1e-32
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                143   2e-32
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                142   4e-32
AM746676_5746(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...   132   4e-29
protein update 2009. 4.26
PSORT 

 psg: 0.99  gvh: 0.78  alm: 0.40  top: 0.47  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for AHA261 is exc
5' end seq. ID AHA261F
5' end seq. 
>AHA261F.Seq
TTATAAATAAATAATGATGAAATATATATATATTTTATTAATATTTTCTTTATTGTTTTT
GAAAATAAATTCACAAAATACAATTTTGTTGAATGCATTAATTTATGATCAAACTCCATC
AAGAAATAATGATTTTCAAATTCCTTCTCCAGGAGGTATTGCAAAAGGGTTAGTAAAATC
TAATTTAGGTTCTGATAATACACCAGTTTTAGTGGCTGAGCGATCATCAACAATTCATTC
ACCAGAAACTTTTAATCAATGGTTTCACAATTATCCAGGAGTAAATTTACCAATTAATTA
TCAAATTACTTTAACTCAAAGTACTACAAATCCAAATGTTTATGCATATACAAATGATGC
CTTTTTTCCAATAGATGGACAAGGATTTGATAATAAGACAAATTATCCATATGAAGCCGT
ATATAGAGATGAACGTGGAACACCACATAATTTTCACTTTTGTTTGCAAATTCACTCAAT
GTTTGCATATAAGAAAGGTGATACTTTCTATTTTAATGGTGATGATGATGTTTGGGTATT
TATGAATAAAATATTAGTTGTTGATTTGGGAGGAATTCACGGTAAAGCAACAACAAGTAT
TAATTTGGATAGATTAGGTTTGACTGAGGGCACCAATTATCCANNNNNNNNNN
Length of 5' end seq. 653
3' end seq. ID AHA261Z
3' end seq. 
>AHA261Z.Seq
NNNNNNNNNNTACAATTATACTGAATCAACATGTGATGACAATGATGCTTGTACTTCAGA
TGTATGTACAGAATATGGTTGTGAGCATTATACATATACTGGTTGTATGAATTGTACTAA
TGGAGGTTGTTTCACTACTCCAGATACATGTAATCATTATGGTTGTAATTTCACTGGTGA
TGGTAAATGCTTCTTCACTCATTTAGAATGTGATGATAATGACCCATGTACTAAAGATCA
TTGCTTATATTCTGGGGATTGTTATTATGAAAAACTTACCAATTGTACAACCCCAACCCC
AACTCAAACTCCTCCTCCAACTCAAACTCCTACTAATCATTCTATTGGTGTTAATGAATG
CGATTGTTGCCCTGAAGGTCAATATTGTTTATTGATTTTTGGACATGAAAGATGTTTCAT
TGCAAATGATGGTGGTGACGGTATTCCAGAGGAAACTATTGGTTGTCCTGGTGTAACAAC
TGGTACACCAACATCAACAGATGGTGGTACAGGTCACTACACTGAATCAGGTACAGGTAA
TCCACATTTATGTGATAGACATCATTGTAGGAGTGGAATGGAATGTCATGTTATTAATGG
AATTCCAGAATGTTTACCATCAAAATACAAATGTTTAGATTGTTTAGATCTTCATTGTGA
AAAACAAGGTGGAAAAACATGTTTTACCATTGAAAATCAAAATTATAAACCAAATATTAA
AGGATGTAAAGATGATTCTTGTTGTAAATATACTCCAACTTGTAGATAATAATCAAAATT
TTTAAAATAAATAATAT
Length of 3' end seq. 797
Connected seq. ID AHA261P
Connected seq. 
>AHA261P.Seq
TTATAAATAAATAATGATGAAATATATATATATTTTATTAATATTTTCTTTATTGTTTTT
GAAAATAAATTCACAAAATACAATTTTGTTGAATGCATTAATTTATGATCAAACTCCATC
AAGAAATAATGATTTTCAAATTCCTTCTCCAGGAGGTATTGCAAAAGGGTTAGTAAAATC
TAATTTAGGTTCTGATAATACACCAGTTTTAGTGGCTGAGCGATCATCAACAATTCATTC
ACCAGAAACTTTTAATCAATGGTTTCACAATTATCCAGGAGTAAATTTACCAATTAATTA
TCAAATTACTTTAACTCAAAGTACTACAAATCCAAATGTTTATGCATATACAAATGATGC
CTTTTTTCCAATAGATGGACAAGGATTTGATAATAAGACAAATTATCCATATGAAGCCGT
ATATAGAGATGAACGTGGAACACCACATAATTTTCACTTTTGTTTGCAAATTCACTCAAT
GTTTGCATATAAGAAAGGTGATACTTTCTATTTTAATGGTGATGATGATGTTTGGGTATT
TATGAATAAAATATTAGTTGTTGATTTGGGAGGAATTCACGGTAAAGCAACAACAAGTAT
TAATTTGGATAGATTAGGTTTGACTGAGGGCACCAATTATCCA----------TACAATT
ATACTGAATCAACATGTGATGACAATGATGCTTGTACTTCAGATGTATGTACAGAATATG
GTTGTGAGCATTATACATATACTGGTTGTATGAATTGTACTAATGGAGGTTGTTTCACTA
CTCCAGATACATGTAATCATTATGGTTGTAATTTCACTGGTGATGGTAAATGCTTCTTCA
CTCATTTAGAATGTGATGATAATGACCCATGTACTAAAGATCATTGCTTATATTCTGGGG
ATTGTTATTATGAAAAACTTACCAATTGTACAACCCCAACCCCAACTCAAACTCCTCCTC
CAACTCAAACTCCTACTAATCATTCTATTGGTGTTAATGAATGCGATTGTTGCCCTGAAG
GTCAATATTGTTTATTGATTTTTGGACATGAAAGATGTTTCATTGCAAATGATGGTGGTG
ACGGTATTCCAGAGGAAACTATTGGTTGTCCTGGTGTAACAACTGGTACACCAACATCAA
CAGATGGTGGTACAGGTCACTACACTGAATCAGGTACAGGTAATCCACATTTATGTGATA
GACATCATTGTAGGAGTGGAATGGAATGTCATGTTATTAATGGAATTCCAGAATGTTTAC
CATCAAAATACAAATGTTTAGATTGTTTAGATCTTCATTGTGAAAAACAAGGTGGAAAAA
CATGTTTTACCATTGAAAATCAAAATTATAAACCAAATATTAAAGGATGTAAAGATGATT
CTTGTTGTAAATATACTCCAACTTGTAGATAATAATCAAAATTTTTAAAATAAATAATAT
Length of connected seq. 1430
Full length Seq ID -
Full length Seq. -
Length of full length seq. -