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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSC379
Library VS
(Link to library)
Clone ID VSC379
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID VSC379E
(Link to Original site)
Representative DNA sequence 
>VSC379 (VSC379Q) /CSM/VS/VSC3-D/VSC379Q.Seq.d/
AGGATATGCAGCATTCATCAAAGCAGGAAACAAAGATGTTTTACCAGAAATTAAAGAAAC
CTTGTTAAAAGCTTACAAAACAACGGATGGTGATTCAAAATTAATTGATGTAAACTTCCC
AGTTTATATGATCTTATCAAAAAAGGAATAAAAACAAAAAGTTTGAAAAAAAGAAAAGAA
AAGTTTTATTTCAACTAAATATATTTAAGTTTAAATAAAGATTTTTTTTTTTAATCAGTT
TTCCACAAACCA
sequence update 2000.10. 5
Translated Amino Acid sequence 
GYAAFIKAGNKDVLPEIKETLLKAYKTTDGDSKLIDVNFPVYMILSKKE*kqkv*kkekk
sfistkyi*v*ikifffnqfstn
Translated Amino Acid sequence (All Frames) 
Frame A:
ricsihqsrkqrcftrn*rnlvkslqnngw*fkin*cklpslydlikkgiktkslkkrke
kfyfn*iylslnkdfff*svfhkp


Frame B:
GYAAFIKAGNKDVLPEIKETLLKAYKTTDGDSKLIDVNFPVYMILSKKE*kqkv*kkekk
sfistkyi*v*ikifffnqfstn


Frame C:
dmqhsskqetkmfyqklkkpc*kltkqrmviqn*lm*tsqfi*syqkrnknkkfekkkrk
vlfqlnifkfk*rffflisfpqt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI557 (VSI557Q) /CSM/VS/VSI5-C/VSI557Q.Seq.d/                        272   2e-72
VSI383 (VSI383Q) /CSM/VS/VSI3-D/VSI383Q.Seq.d/                        272   2e-72
VSH583 (VSH583Q) /CSM/VS/VSH5-D/VSH583Q.Seq.d/                        272   2e-72
VSF436 (VSF436Q) /CSM/VS/VSF4-B/VSF436Q.Seq.d/                        272   2e-72
VSC379 (VSC379Q) /CSM/VS/VSC3-D/VSC379Q.Seq.d/                        272   2e-72
VFM772 (VFM772Q) /CSM/VF/VFM7-C/VFM772Q.Seq.d/                        272   2e-72
VFK847 (VFK847Q) /CSM/VF/VFK8-B/VFK847Q.Seq.d/                        272   2e-72
VFG183 (VFG183Q) /CSM/VF/VFG1-D/VFG183Q.Seq.d/                        272   2e-72
VFB456 (VFB456Q) /CSM/VF/VFB4-C/VFB456Q.Seq.d/                        272   2e-72
SSF245 (SSF245Q) /CSM/SS/SSF2-B/SSF245Q.Seq.d/                        272   2e-72
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC139469|AC139469.2 Homo sapiens chromosome 16 clone RP11-283M20, WORKING DRAFT SEQUENCE, 10 unordered pieces.    48  0.050  1
AC140896|AC140896.1 Homo sapiens chromosome 16 clone RP11-699D3, WORKING DRAFT SEQUENCE, 19 unordered pieces.    48  0.050  1
AC145000|AC145000.1 Gorilla gorilla gorilla clone CH255-34F22, WORKING DRAFT SEQUENCE, 13 unordered pieces.    48  0.050  1
AC138936|AC138936.1 Homo sapiens chromosome 16 clone RP11-692A16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    48  0.050  1
AC141269|AC141269.1 Homo sapiens chromosome 16 clone RP11-1387D15, WORKING DRAFT SEQUENCE, 14 unordered pieces.    48  0.050  1
AL451071|AL451071.3 Human chromosome 14 DNA sequence BAC R-779M2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human).    46  0.20  1
AC141627|AC141627.1 Homo sapiens chromosome 16 clone XXfos-88953G3, WORKING DRAFT SEQUENCE, 1 unordered piece.    48  0.21  2
AC141321|AC141321.1 Homo sapiens chromosome 16 clone XXfos-88712E1, WORKING DRAFT SEQUENCE, 1 unordered piece.    48  0.22  2
AC092326|AC092326.4 Homo sapiens chromosome 16 clone RP11-14N9, complete sequence.    48  0.62  2
AC139820|AC139820.2 Homo sapiens chromosome 16 clone RP11-150A14, WORKING DRAFT SEQUENCE, 1 ordered piece.    48  0.68  2
dna update 2003. 9.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000250_2991(CP000250|pid:none) Rhodopseudomonas palustris HaA2...    32   7.1
protein update 2009. 3.20
PSORT 

 psg: 0.48  gvh: 0.31  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VSC379 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSC379E
Full length Seq. 
>VSC379E.Seq
AGGATATGCAGCATTCATCAAAGCAGGAAACAAAGATGTTTTACCAGAAATTAAAGAAAC
CTTGTTAAAAGCTTACAAAACAACGGATGGTGATTCAAAATTAATTGATGTAAACTTCCC
AGTTTATATGATCTTATCAAAAAAGGAATAAAAACAAAAAGTTTGAAAAAAAGAAAAGAA
AAGTTTTATTTCAACTAAATATATTTAAGTTTAAATAAAGATTTTTTTTTTTAATCAGTT
TTCCACAAACCA
Length of full length seq. 252