>VSC377 (VSC377Q) /CSM/VS/VSC3-D/VSC377Q.Seq.d/
AAAATGGACTCCAAGAACGTTGAACTTTACACCCCACGTAAGTGCTCTGCCACCAACCGT
TTAATCACCGCCAAGGATCACGCTTCCGTCCAAATTAACATTGGTCACGTCAATGCTGAA
GGTATTTACAATGGTGAACAAACCATCTTTGCTTTCTGCGGTTTCCTCCGTAACAATGGT
CAATCCGATGCTGCTTTCAACAGATTAGCCCAACAAAAAGGTTTCTTAAAATCATTTTAA
ATTGACTCATTTTTAGATATTTTATAAAATAAAAAAAGCTTTTTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

KMDSKNVELYTPRKCSATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFLRNNG
QSDAAFNRLAQQKGFLKSF*idsfldil*nkksflkkkkkkkkkkkkkkkkkkk

Frame A:
KMDSKNVELYTPRKCSATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFLRNNG
QSDAAFNRLAQQKGFLKSF*idsfldil*nkksflkkkkkkkkkkkkkkkkkkk


Frame B:
kwtprtlnftphvsalpptv*sppritlpskltlvtsmlkvftmvnkpsllsavssvtmv
npmllstd*pnkkvs*nhfklthf*ifykikkaf*kkkkkkkkkkkkkkkkkkk


Frame C:
nglqer*tlhpt*vlchqpfnhrqgsrfrpn*hwsrqc*rylqw*tnhlcflrfpp*qws
irccfqqisptkrflkiiln*lifryfik*kklfkkkkkkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC377 (VSC377Q) /CSM/VS/VSC3-D/VSC377Q.Seq.d/                        535   e-151
VSK496 (VSK496Q) /CSM/VS/VSK4-D/VSK496Q.Seq.d/                        504   e-142
VSK316 (VSK316Q) /CSM/VS/VSK3-A/VSK316Q.Seq.d/                        504   e-142
VSI702 (VSI702Q) /CSM/VS/VSI7-A/VSI702Q.Seq.d/                        504   e-142
VSH268 (VSH268Q) /CSM/VS/VSH2-C/VSH268Q.Seq.d/                        504   e-142
VSH266 (VSH266Q) /CSM/VS/VSH2-C/VSH266Q.Seq.d/                        504   e-142
VSD431 (VSD431Q) /CSM/VS/VSD4-B/VSD431Q.Seq.d/                        504   e-142
VSC515 (VSC515Q) /CSM/VS/VSC5-A/VSC515Q.Seq.d/                        504   e-142
VSJ632 (VSJ632Q) /CSM/VS/VSJ6-B/VSJ632Q.Seq.d/                        498   e-140
VSF747 (VSF747Q) /CSM/VS/VSF7-B/VSF747Q.Seq.d/                        490   e-138

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CA903143|CA903143.1 PCSC20975 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 40S ribosomal protein S21, mRNA sequence.    50  4e-04  2
BE586942|BE586942.1 WHE0507_A04_B07ZR Secale cereale aluminum-stressed root tip cDNA library Secale cereale cDNA clone WHE0507_A04_B07, mRNA sequence.    54  0.001  1
CA903142|CA903142.1 PCSC20414 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 40S ribosomal protein S21, mRNA sequence.    50  0.002  2
CA903144|CA903144.1 PCSC21037 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 40S ribosomal protein S21, mRNA sequence.    50  0.002  2
CB376945|CB376945.1 Hb07H09 Latex Lambda TriplEX cDNA Library Hevea brasiliensis cDNA clone Hb07H09 5', mRNA sequence.    52  0.004  1
AL404493|AL404493.1 T3 end of clone AT0AA016F09 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii.    40  0.012  2
BM260237|BM260237.1 baa17d07.x1 Cassava EYC library1 Manihot esculenta cDNA 3' similar to SW:RS21_MAIZE Q41852 40S RIBOSOMAL PROTEIN S21. [1] ;, mRNA sequence.    50  0.018  1
CD724539|CD724539.1 mk_12_1 Pennisetum glaucum seedlings exposed to cold (4 C) stress Pennisetum glaucum cDNA clone mk_12_1, mRNA sequence.    50  0.018  1
BE054082|BE054082.2 GA__Ea0028B20f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0028B20f, mRNA sequence.    48  0.070  1
BG608049|BG608049.1 WHE2496_C03_E06ZS Triticum monococcum early reproductive apex cDNA library Triticum monococcum cDNA clone WHE2496_C03_E06, mRNA sequence.    48  0.070  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54BN4) RecName: Full=40S ribosomal protein S21;                     159   4e-38
GM961446_1(GM961446|pid:none) Sequence 8400 from Patent WO200814...   100   3e-20
GM961448_1(GM961448|pid:none) Sequence 8402 from Patent WO200814...    99   4e-20
EF145835_1(EF145835|pid:none) Populus trichocarpa clone WS0113_L...    99   5e-20
GM961348_1(GM961348|pid:none) Sequence 8302 from Patent WO200814...    99   6e-20
BT062080_1(BT062080|pid:none) Zea mays full-length cDNA clone ZM...    99   6e-20
FB334991_1(FB334991|pid:none) Sequence 2517 from Patent WO200711...    98   8e-20
AM471391_2(AM471391|pid:none) Vitis vinifera contig VV78X082935....    98   8e-20
EF145799_1(EF145799|pid:none) Populus trichocarpa clone WS0113_H...    98   1e-19
GM961372_1(GM961372|pid:none) Sequence 8326 from Patent WO200814...    98   1e-19

 psg: 0.59  gvh: 0.39  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VSC377 is cyt

>VSC377E.Seq
AAAATGGACTCCAAGAACGTTGAACTTTACACCCCACGTAAGTGCTCTGCCACCAACCGT
TTAATCACCGCCAAGGATCACGCTTCCGTCCAAATTAACATTGGTCACGTCAATGCTGAA
GGTATTTACAATGGTGAACAAACCATCTTTGCTTTCTGCGGTTTCCTCCGTAACAATGGT
CAATCCGATGCTGCTTTCAACAGATTAGCCCAACAAAAAGGTTTCTTAAAATCATTTTAA
ATTGACTCATTTTTAGATATTTTATAAAATAAAAAAAGCTTTTTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA