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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSC371
Library VS
(Link to library)
Clone ID VSC371
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSC371E
(Link to Original site)
Representative DNA sequence 
>VSC371 (VSC371Q) /CSM/VS/VSC3-C/VSC371Q.Seq.d/
AACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTTCTTTAAA
TCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTACCCACAACTTGT
ACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCACATTAAACCAAACTT
CACTGAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGGTAATGATCCAGATTA
TGTTAAAAAACCATTAGCCTCAAAAGATGATTAAATGAAATAACTTAAAAACCAATTATT
TACTTTTGACAAACAGTAATATTAATAAATACAAAAAAAAAAAAAAAAAAGGAAAAACAT
TATTGATAGTAATAAAAAAAAAAAATACTAAACTATCAAACACTTT
sequence update 2000.10. 5
Translated Amino Acid sequence 
TTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQLVPIVKEVCKEHNITYHIKPNF
TEAIMSHINYLYKMGNDPDYVKKPLASKDD*mk*lknqlftfdkq*y**iqkkkkkrkni
idsnkkkky*tikhf
Translated Amino Acid sequence (All Frames) 
Frame A:
nysrlwswftplylf*wffkssscssfipincsrflpttctnckrsl*rt*hylph*tkl
h*syyvth*lplqng**srlc*ktislkr*lneit*kpiiyf*qtvilintkkkkkkekh
y****kkkilnyqtl


Frame B:
TTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQLVPIVKEVCKEHNITYHIKPNF
TEAIMSHINYLYKMGNDPDYVKKPLASKDD*mk*lknqlftfdkq*y**iqkkkkkrkni
idsnkkkky*tikhf


Frame C:
llkimvmvhsfvpflvvl*iiklfiiyshqllkisthnlyql*kkfvknitllttlnqts
lkllchtlitftkwvmiqimlknh*pqkmik*nnlktnyllltnsninkykkkkkkgktl
livikkkntklsnt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF218 (VSF218Q) /CSM/VS/VSF2-A/VSF218Q.Seq.d/                        658   0.0
VSC833 (VSC833Q) /CSM/VS/VSC8-B/VSC833Q.Seq.d/                        658   0.0
VSC371 (VSC371Q) /CSM/VS/VSC3-C/VSC371Q.Seq.d/                        658   0.0
SSB813 (SSB813Q) /CSM/SS/SSB8-A/SSB813Q.Seq.d/                        658   0.0
SLG121 (SLG121Q) /CSM/SL/SLG1-A/SLG121Q.Seq.d/                        658   0.0
SLE621 (SLE621Q) /CSM/SL/SLE6-A/SLE621Q.Seq.d/                        658   0.0
SLC603 (SLC603Q) /CSM/SL/SLC6-A/SLC603Q.Seq.d/                        658   0.0
SLA259 (SLA259Q) /CSM/SL/SLA2-C/SLA259Q.Seq.d/                        658   0.0
SLA256 (SLA256Q) /CSM/SL/SLA2-C/SLA256Q.Seq.d/                        658   0.0
VSF803 (VSF803Q) /CSM/VS/VSF8-A/VSF803Q.Seq.d/                        607   e-173
own update 2001. 3.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BD092935|BD092935.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids in plants.   658  0.0  1
BD082645|BD082645.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids.   658  0.0  1
BD082630|BD082630.1 Methods and compositions for synthesis of long chain poly-unsaturated fatty acids.   658  0.0  1
AB029311|AB029311.1 Dictyostelium discoideum Dd des5 gene for fatty acid desaturase, complete cds.   496  e-177  2
AB022097|AB022097.1 Dictyostelium discoideum mRNA for delta 5 fatty acid desaturase, complete cds.    90  2e-28  3
BZ067998|BZ067998.1 lki76e10.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    46  0.33  1
BZ033449|BZ033449.1 oej70g10.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    46  0.33  1
AC122850|AC122850.4 Mus musculus chromosome 10 clone RP23-167J19, complete sequence.    40  0.49  4
BM269513|BM269513.1 MEST410-C03.univ ISUM5-RN Zea mays cDNA clone MEST410-C03 3', mRNA sequence.    44  1.3  1
AP000872|AP000872.5 Homo sapiens genomic DNA, chromosome 11q clone:RP11-727A20, complete sequences.    44  1.3  1
dna update 2003. 9.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9Y1W0) RecName: Full=Delta(5) fatty acid desaturase A;        ...   195   5e-49
(O96099) RecName: Full=Delta(5) fatty acid desaturase B;        ...   150   2e-35
(Q1ZXQ5) RecName: Full=Probable Delta(5) fatty acid desaturase C...   114   1e-24
AF419297_1(AF419297|pid:none) Pythium irregulare delta-5 fatty a...    89   4e-17
AB188307_1(AB188307|pid:none) Mortierella alpina gene for delta5...    85   9e-16
(O74212) RecName: Full=Delta(5) fatty acid desaturase;          ...    84   2e-15
CP000592_278(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...    81   1e-14
CP001574_328(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    80   2e-14
EF678404_1(EF678404|pid:none) Picea sitchensis clone WS0291_A04 ...    79   4e-14
CS020137_1(CS020137|pid:none) Sequence 91 from Patent WO20050123...    78   9e-14
protein update 2009. 7.29
PSORT 

 psg: 0.75  gvh: 0.55  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: mitochondrial

>> prediction for VSC371 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSC371E
Full length Seq. 
>VSC371E.Seq
AACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTTCTTTAAA
TCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTACCCACAACTTGT
ACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCACATTAAACCAAACTT
CACTGAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGGTAATGATCCAGATTA
TGTTAAAAAACCATTAGCCTCAAAAGATGATTAAATGAAATAACTTAAAAACCAATTATT
TACTTTTGACAAACAGTAATATTAATAAATACAAAAAAAAAAAAAAAAAAGGAAAAACAT
TATTGATAGTAATAAAAAAAAAAAATACTAAACTATCAAACACTTT
Length of full length seq. 406