>VSC358 (VSC358Q) /CSM/VS/VSC3-C/VSC358Q.Seq.d/
XXXXXXXXXXCCTGGTAGAGTTAGTGTAACTTGGGAATTCCTTGGTGGTAGTTCAAGTGG
TGGTACAACAGGTACAGTTTCAACAACAACTGGTGGTAGTGGTACTTGTCCAAGAACTGC
AACAGTTAGTGCAGGTCAAGGCTGTTATGACGTATGGGTATCAAATTGTAATAATGCTTG
GGATGAGAACCAATTCTACGCTGCTAATCCAGGTGTATCATGTACTGCTCTTCAAGTTGG
TCAAAAATTATGTTGTGGTGGTACATCATCATCATCTTCAACAACTGGTAGTGCTTCTTG
TTCAAGAAAAGGTACTGTTGATGCAGGTCAAGGTTGTTATGATGTATGGGTATCAAAATG
TAATAATGCATGGAATGAGAATCAATTCTATGCTGCAAATCCAGGTGTTGTTTGTACTGA
TCTTCAAGTTGGCCAACAATTATGTTGTAATTAATAATTTCAAATTAATAATTGATGAAT
ATTATTAAGATAAAATAAAAACAATATTTTTTGATAGCAA

---lvelv*LGNSLVVVQVVVQQVQFQQQLVVVVLVQELQQLVQVKAVMTYGYQIVIMLG
MRTNSTLLIQVYHVLLFKLVKNYVVVVHHHHLQQLVVLLVQEKVLLMQVKVVMMYGYQNV
IMHGMRINSMLQIQVLFVLIFKLANNYVVINNFKLIIDEYY*dkiktiffds

Frame A:
---lvelv*LGNSLVVVQVVVQQVQFQQQLVVVVLVQELQQLVQVKAVMTYGYQIVIMLG
MRTNSTLLIQVYHVLLFKLVKNYVVVVHHHHLQQLVVLLVQEKVLLMQVKVVMMYGYQNV
IMHGMRINSMLQIQVLFVLIFKLANNYVVINNFKLIIDEYY*dkiktiffds


Frame B:
---w*s*cnlgipww*fkwwynrysfnnnww*wylskncns*crsrll*rmgikl**clg
*epilrc*srcimycssswskimlwwyiiiifnnw*cflfkkryc*crsrll*cmgikm*
*cme*esilccksrccly*ssswptiml*liisn**lmniikik*kqyflia


Frame C:
---grvsvtweflggsssggttgtvstttggsgtcprtatvsagqgcydvwvsncnnawd
enqfyaanpgvsctalqvgqklccggtsssssttgsascsrkgtvdagqgcydvwvskcn
nawnenqfyaanpgvvctdlqvgqqlccn**fqinn**illr*nknnif**q

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI238 (VSI238Q) /CSM/VS/VSI2-B/VSI238Q.Seq.d/                        868   0.0
VSI190 (VSI190Q) /CSM/VS/VSI1-D/VSI190Q.Seq.d/                        868   0.0
VSH896 (VSH896Q) /CSM/VS/VSH8-D/VSH896Q.Seq.d/                        868   0.0
VSC889 (VSC889Q) /CSM/VS/VSC8-D/VSC889Q.Seq.d/                        868   0.0
VSC464 (VSC464Q) /CSM/VS/VSC4-C/VSC464Q.Seq.d/                        868   0.0
VSC358 (VSC358Q) /CSM/VS/VSC3-C/VSC358Q.Seq.d/                        868   0.0
VSB701 (VSB701Q) /CSM/VS/VSB7-A/VSB701Q.Seq.d/                        868   0.0
VSA583 (VSA583Q) /CSM/VS/VSA5-D/VSA583Q.Seq.d/                        852   0.0
VSI412 (VSI412Q) /CSM/VS/VSI4-A/VSI412Q.Seq.d/                        781   0.0
VSJ825 (VSJ825Q) /CSM/VS/VSJ8-B/VSJ825Q.Seq.d/                        527   e-149

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    44  0.075  6
AW828708|AW828708.1 ra73a06.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5', mRNA sequence.    46  0.43  1
AW571037|AW571037.1 ra15d12.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to contains element DBR repetitive element ;, mRNA sequence.    46  0.43  1
BG440209|BG440209.1 GA__Ea0006G06f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0006G06f, mRNA sequence.    46  0.43  1
AW588731|AW588731.1 ra03h10.y2 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to contains element DBR repetitive element ;, mRNA sequence.    46  0.43  1
BU712826|BU712826.1 SJAABGB04 Adult SjC 7/94 Schistosoma japonicum cDNA, mRNA sequence.    46  0.43  1
BU711530|BU711530.1 SJAAANF09 Adult SjC 7/94 Schistosoma japonicum cDNA, mRNA sequence.    46  0.43  1
AW571277|AW571277.1 ra16d05.y2 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5', mRNA sequence.    46  0.43  1
AW571332|AW571332.1 ra19a06.y2 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5', mRNA sequence.    46  0.43  1
AW571369|AW571369.1 ra19f03.y2 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5', mRNA sequence.    46  0.43  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T29861(T29861)hypothetical protein F10G2.5 - Caenorhabditis eleg...    55   1e-06
AE013599_884(AE013599|pid:none) Drosophila melanogaster chromoso...    35   1.1
AM910991_170(AM910991|pid:none) Plasmodium knowlesi strain H chr...    35   1.5
CU633899_597(CU633899|pid:none) Podospora anserina genomic DNA c...    33   4.2
AF000580_3(AF000580|pid:none) Dictyostelium discoideum plasmid D...    33   4.3
BC166269_1(BC166269|pid:none) Xenopus tropicalis hypothetical pr...    32   7.3
CP000853_1912(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,...    32   9.4
CP001175_1691(CP001175|pid:none) Listeria monocytogenes HCC23, c...    32   9.5
AI1545(AI1545) hypothetical protein lin0905 [imported] - Listeri...    32   9.5

 psg: 0.90  gvh: 0.58  alm: 0.33  top: 0.47  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	 12.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSC358 is cyt

>VSC358Z.Seq
----------CCTGGTAGAGTTAGTGTAACTTGGGAATTCCTTGGTGGTAGTTCAAGTGG
TGGTACAACAGGTACAGTTTCAACAACAACTGGTGGTAGTGGTACTTGTCCAAGAACTGC
AACAGTTAGTGCAGGTCAAGGCTGTTATGACGTATGGGTATCAAATTGTAATAATGCTTG
GGATGAGAACCAATTCTACGCTGCTAATCCAGGTGTATCATGTACTGCTCTTCAAGTTGG
TCAAAAATTATGTTGTGGTGGTACATCATCATCATCTTCAACAACTGGTAGTGCTTCTTG
TTCAAGAAAAGGTACTGTTGATGCAGGTCAAGGTTGTTATGATGTATGGGTATCAAAATG
TAATAATGCATGGAATGAGAATCAATTCTATGCTGCAAATCCAGGTGTTGTTTGTACTGA
TCTTCAAGTTGGCCAACAATTATGTTGTAATTAATAATTTCAAATTAATAATTGATGAAT
ATTATTAAGATAAAATAAAAACAATATTTTTTGATAGCAA