>AHA254 (AHA254Q) /CSM/AH/AHA2-C/AHA254Q.Seq.d/
XXXXXXXXXXCCTTGGAGAATTCAAGTGAATCACCAGTGTNGGTAGATCTTAGTTCCGAT
CATAGATTCAATGAAAAATGGACNTATGGTCAACCAGAAACCAATNGTGCAGCAATTAAA
GAATCCAAATTAATCGCCAATCCAGGTTGTTATGCAACTGGTATGTTTTTAACATTGAAG
CCATTTGTCNATGATTTAGTAACNCCACCATCTTGTTTTGGTATTTCAGGTTATTCCGGT
GCTGGTAGTAAACCATCTGAAAAGAATGATCCAACACGTNTAAGTGATAATATNTTACCT
TACAAATTGGTTCAACATANTCATGAACTTGAGGTTAGTCATCAATTGGGTAGTCCAATN
TATTTCATGCCACATGTTGGTCAATTCTTTCAAGGTATTACCCTTACAATTTCAATGGAA
CTCAAATATCCAATGACCAAAGAACAAGTGGTCGAACGTTATCAAAAATTCTATCAAAAT
GAACCGTTAATTAAAATCGATNAAGATGGTATTCCAGAGGTTAAATCAAATAGTGGTAAA
CAT

---LENSSESPVXVDLSSDHRFNEKWTYGQPETNXAAIKESKLIANPGCYATGMFLTLKP
FVXDLVTPPSCFGISGYSGAGSKPSEKNDPTRXSDNXLPYKLVQHXHELEVSHQLGSPXY
FMPHVGQFFQGITLTISMELKYPMTKEQVVERYQKFYQNEPLIKIDXDGIPEVKSNSGKH

Frame A:
---lgefk*itsvgrs*frs*iq*kmdxwstrnqxcsn*riqinrqsrllcnwyvfniea
icx*fsnxtilfwyfrlfrcw**ti*ke*sntxk**yxtlqigstxs*t*g*ssig*snx
fhatcwsilsryypynfngtqisndqrtsgrtlskilsk*tvn*nrxrwysrg*ik*w*t


Frame B:
---LENSSESPVXVDLSSDHRFNEKWTYGQPETNXAAIKESKLIANPGCYATGMFLTLKP
FVXDLVTPPSCFGISGYSGAGSKPSEKNDPTRXSDNXLPYKLVQHXHELEVSHQLGSPXY
FMPHVGQFFQGITLTISMELKYPMTKEQVVERYQKFYQNEPLIKIDXDGIPEVKSNSGKH


Frame C:
---wriqvnhqcx*ilvpiidsmkngxmvnqkpxvqqlknpn*spiqvvmqlvcf*h*sh
lsmi**xhhlvlvfqvipvlvvnhlkrmiqhv*viixyltnwfnixmnlrlvinwvvqxi
schmlvnsfkvlplqfqwnsniq*pknkwsnviknsikmnr*lksxkmvfqrlnqivvn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA254 (AHA254Q) /CSM/AH/AHA2-C/AHA254Q.Seq.d/                        997   0.0
VHI108 (VHI108Q) /CSM/VH/VHI1-A/VHI108Q.Seq.d/                        989   0.0
VHC503 (VHC503Q) /CSM/VH/VHC5-A/VHC503Q.Seq.d/                        989   0.0
SHK272 (SHK272Q) /CSM/SH/SHK2-C/SHK272Q.Seq.d/                        989   0.0
CHM268 (CHM268Q) /CSM/CH/CHM2-C/CHM268Q.Seq.d/                        989   0.0
AHN867 (AHN867Q) /CSM/AH/AHN8-C/AHN867Q.Seq.d/                        989   0.0
AHE809 (AHE809Q) /CSM/AH/AHE8-A/AHE809Q.Seq.d/                        989   0.0
AHE324 (AHE324Q) /CSM/AH/AHE3-A/AHE324Q.Seq.d/                        989   0.0
VHK445 (VHK445Q) /CSM/VH/VHK4-B/VHK445Q.Seq.d/                        985   0.0
VHJ741 (VHJ741Q) /CSM/VH/VHJ7-B/VHJ741Q.Seq.d/                        985   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL425928|AL425928.1 clone BA0AB008G09 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    60   3e-05  1
AC138190|AC138190.1 Mus musculus clone RP23-224G5, LOW-PASS SEQUENCE SAMPLING.    36   0.47   4
AC108850|AC108850.2 Mus musculus clone RP24-85N11, WORKING DRAFT SEQUENCE, 7 unordered pieces.    44   1.9    1
AC107834|AC107834.5 Mus musculus clone RP23-251L12, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44   1.9    1
AC100895|AC100895.2 Mus musculus clone RP23-69G5, LOW-PASS SEQUENCE SAMPLING.    44   1.9    1
AC125310|AC125310.2 Mus musculus chromosome UNK clone RP24-548E5, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44   1.9    1
AC107800|AC107800.4 Mus musculus clone RP23-28K16, WORKING DRAFT SEQUENCE, 14 unordered pieces.    44   1.9    1
AC100561|AC100561.6 Mus musculus chromosome 1 clone RP23-154C4 map 1, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.    44   1.9    1
BX530083|BX530083.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-3L17.    32   3.4    6
CC263176|CC263176.1 CH261-56F7_Sp6.1 CH261 Gallus gallus genomic clone CH261-56F7, DNA sequence.    42   7.6    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013598_2615(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K...   185   5e-46
CP000967_1954(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P...   182   4e-45
AP008229_2516(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M...   182   4e-45
AM039952_2545(AM039952|pid:none) Xanthomonas campestris pv. vesi...   182   5e-45
AM920689_1961(AM920689|pid:none) Xanthomonas campestris pv. camp...   174   1e-42
AM743169_3114(AM743169|pid:none) Stenotrophomonas maltophilia K2...   173   3e-42
CP001111_2719(CP001111|pid:none) Stenotrophomonas maltophilia R5...   172   6e-42
(Q4UVI5) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta...   171   1e-41
CP000941_285(CP000941|pid:none) Xylella fastidiosa M12, complete...   162   4e-39
CR382128_704(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...   162   6e-39

 psg: 0.75  gvh: 0.35  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 24.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for AHA254 is cyt

>AHA254Z.Seq
NNNNNNNNNNCCTTGGAGAATTCAAGTGAATCACCAGTGTNGGTAGATCTTAGTTCCGAT
CATAGATTCAATGAAAAATGGACNTATGGTCAACCAGAAACCAATNGTGCAGCAATTAAA
GAATCCAAATTAATCGCCAATCCAGGTTGTTATGCAACTGGTATGTTTTTAACATTGAAG
CCATTTGTCNATGATTTAGTAACNCCACCATCTTGTTTTGGTATTTCAGGTTATTCCGGT
GCTGGTAGTAAACCATCTGAAAAGAATGATCCAACACGTNTAAGTGATAATATNTTACCT
TACAAATTGGTTCAACATANTCATGAACTTGAGGTTAGTCATCAATTGGGTAGTCCAATN
TATTTCATGCCACATGTTGGTCAATTCTTTCAAGGTATTACCCTTACAATTTCAATGGAA
CTCAAATATCCAATGACCAAAGAACAAGTGGTCGAACGTTATCAAAAATTCTATCAAAAT
GAACCGTTAATTAAAATCGATNAAGATGGTATTCCAGAGGTTAAATCAAATAGTGGTAAA
CAT