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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSC334
Library VS
(Link to library)
Clone ID VSC334
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15185-1
Original site URL
Representative seq. ID VSC334E
(Link to Original site)
Representative DNA sequence 
>VSC334 (VSC334Q) /CSM/VS/VSC3-B/VSC334Q.Seq.d/
CAGTTTCATACACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTA
CCAGATATGGTGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTA
CCTACACCTGTTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGA
AATGTAACGGTTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTG
GTGCCACTGTTAGATCAACTATCAGACGTCTCAGGGAGTTAAATAACTAAACCATTTATA
TATGAAATAAAATAAATCAGGACCAATATACACTGGTTTTAAAAAATAAATAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAT
sequence update 2000.10. 5
Translated Amino Acid sequence 
VSYTMAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWK
CNGCRKVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytlvlknk*kkk
kkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qfhtqwpkeqrkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhplvsg
nvtvavkf*lvvlglcqlplvplldqlsdvsgs*itkpfiyeik*irtnihwf*kinkkk
kkkkkkk


Frame B:
sfihngqknkesrscr*iryqiwcffkkas*kdgnhptrylhlfilw*rcrqtfirwyle
m*rlp*sfswwcldyvncrwchc*inyqtsqgvk*lnhlymk*nksgpiytgfkk*ikkk
kkkkkkn


Frame C:
VSYTMAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWK
CNGCRKVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytlvlknk*kkk
kkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC334 (VSC334Q) /CSM/VS/VSC3-B/VSC334Q.Seq.d/                        696   0.0
VSG249 (VSG249Q) /CSM/VS/VSG2-C/VSG249Q.Seq.d/                        688   0.0
VSE566 (VSE566Q) /CSM/VS/VSE5-C/VSE566Q.Seq.d/                        688   0.0
VSE459 (VSE459Q) /CSM/VS/VSE4-C/VSE459Q.Seq.d/                        688   0.0
VSE429 (VSE429Q) /CSM/VS/VSE4-B/VSE429Q.Seq.d/                        688   0.0
VHA861 (VHA861Q) /CSM/VH/VHA8-C/VHA861Q.Seq.d/                        688   0.0
VHA808 (VHA808Q) /CSM/VH/VHA8-A/VHA808Q.Seq.d/                        688   0.0
VSI473 (VSI473Q) /CSM/VS/VSI4-D/VSI473Q.Seq.d/                        686   0.0
VSH888 (VSH888Q) /CSM/VS/VSH8-D/VSH888Q.Seq.d/                        686   0.0
VSF596 (VSF596Q) /CSM/VS/VSF5-D/VSF596Q.Seq.d/                        686   0.0
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL116011|AL116011.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  5e-15  2
AL116009|AL116009.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  5e-15  2
AL115603|AL115603.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  5e-15  2
AL112083|AL112083.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  5e-15  2
AL112069|AL112069.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  5e-15  2
AL111042|AL111042.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  5e-15  2
AL114982|AL114982.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    80  1e-13  2
AL110769|AL110769.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  3e-13  2
BM027100|BM027100.1 GIT0000389 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence.    84  1e-12  1
BI323490|BI323490.1 kt71h07.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:R37A_OSTOS O61598 60S RIBOSOMAL PROTEIN L37A. ;, mRNA sequence.    42  7e-12  4
dna update 2003. 9.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UG4) RecName: Full=60S ribosomal protein L37a;  &JE0321(JE03...   184   9e-46
(O61462) RecName: Full=60S ribosomal protein L37a;  &AF040712_1(...   149   4e-35
EZ000381_1(EZ000381|pid:none) TSA: Culex tarsalis Ctar-19 60S ri...   148   7e-35
A63921_1(A63921|pid:none) Sequence 46 from Patent WO9723633.  &C...   147   2e-34
EU125030_1(EU125030|pid:none) Eurythoe complanata ribosomal prot...   146   2e-34
(O61598) RecName: Full=60S ribosomal protein L37a;  &AF052737_1(...   146   3e-34
EU116912_1(EU116912|pid:none) Barentsia elongata putative riboso...   146   3e-34
AM049130_1(AM049130|pid:none) Agriotes lineatus mRNA for ribosom...   145   3e-34
AF363029_1(AF363029|pid:none) Branchiostoma belcheri 60S ribosom...   145   4e-34
AM049133_1(AM049133|pid:none) Sphaerius sp. APV-2005 mRNA for ri...   145   4e-34
protein update 2009. 7.29
PSORT 

 psg: 0.77  gvh: 0.27  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for VSC334 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSC334E
Full length Seq. 
>VSC334E.Seq
CAGTTTCATACACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTA
CCAGATATGGTGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTA
CCTACACCTGTTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGA
AATGTAACGGTTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTG
GTGCCACTGTTAGATCAACTATCAGACGTCTCAGGGAGTTAAATAACTAAACCATTTATA
TATGAAATAAAATAAATCAGGACCAATATACACTGGTTTTAAAAAATAAATAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAT
Length of full length seq. 382