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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSC320
Library VS
(Link to library)
Clone ID VSC320
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16203-1
Original site URL
Representative seq. ID VSC320E
(Link to Original site)
Representative DNA sequence 
>VSC320 (VSC320Q) /CSM/VS/VSC3-A/VSC320Q.Seq.d/
GTTTTTCATCACATTCACACACATAATATATATTAAAATGTCTTACACTCCAAACTCATT
CGTCGGTGTTTTATATGGTCTTAGCGTTTTATTTGGCATTTCACATGGTGTCGGTAAATT
AAATACCTTCAAATCAATTGCCAAAGAAGATTTTTCAAAAGAAATTAAAACTACTGCTAC
TGCTGAAAAATCAAAAGCATACCAAGAAGGTTTCGAAGCTGGTGTTAAATCAAGTCAACC
AAAAGCAGGAGGTGTCACTTATGGTAGTGAAATCGAAAAACTCATTGCTGAAACCTGTGG
TACCAACCTTTTACAACAAAACTAAAATAAACCAACAACAGTAATATAATAATATAAATA
CAAATTCCACATATTTAAAAAAATAAATCTACAAAAAAAAAAAAAAAAAAAAACATGTAT
AAAACTCAATTTTACGTGTAATTTTATTAT
sequence update 2000.10. 5
Translated Amino Acid sequence 
FFITFTHIIYIKMSYTPNSFVGVLYGLSVLFGISHGVGKLNTFKSIAKEDFSKEIKTTAT
AEKSKAYQEGFEAGVKSSQPKAGGVTYGSEIEKLIAETCGTNLLQQN*nkpttvi**yky
kfhifkkinlqkkkkkktciklnftcnfi
Translated Amino Acid sequence (All Frames) 
Frame A:
vfhhihthniy*nvlhsklirrcfiws*rfiwhftwcr*ikylqincqrrffkrn*nycy
c*kiksiprrfrswc*ikstksrrchlw**nrkthc*nlwyqpfttklk*tnnsniii*i
qiphi*knkstkkkkkknmyktqfyv*fyy


Frame B:
FFITFTHIIYIKMSYTPNSFVGVLYGLSVLFGISHGVGKLNTFKSIAKEDFSKEIKTTAT
AEKSKAYQEGFEAGVKSSQPKAGGVTYGSEIEKLIAETCGTNLLQQN*nkpttvi**yky
kfhifkkinlqkkkkkktciklnftcnfi


Frame C:
fsshsht*yilkcltlqthssvfymvlafylafhmvsvn*ipsnqlpkkifqkklkllll
lknqkhtkkvsklvlnqvnqkqevslmvvksknsllkpvvptfynktkinqqq*ynnint
nstylkk*iykkkkkkkhv*nsilrvill
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC320 (VSC320Q) /CSM/VS/VSC3-A/VSC320Q.Seq.d/                        745   0.0
VHO746 (VHO746Q) /CSM/VH/VHO7-B/VHO746Q.Seq.d/                        729   0.0
VHG162 (VHG162Q) /CSM/VH/VHG1-C/VHG162Q.Seq.d/                        729   0.0
VSK142 (VSK142Q) /CSM/VS/VSK1-B/VSK142Q.Seq.d/                        728   0.0
SSA638 (SSA638Q) /CSM/SS/SSA6-B/SSA638Q.Seq.d/                        716   0.0
VSG577 (VSG577Q) /CSM/VS/VSG5-D/VSG577Q.Seq.d/                        700   0.0
VSH163 (VSH163Q) /CSM/VS/VSH1-C/VSH163Q.Seq.d/                        698   0.0
VFA207 (VFA207Q) /CSM/VF/VFA2-A/VFA207Q.Seq.d/                        696   0.0
VHF683 (VHF683Q) /CSM/VH/VHF6-D/VHF683Q.Seq.d/                        672   0.0
VSH281 (VSH281Q) /CSM/VS/VSH2-D/VSH281Q.Seq.d/                        646   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY254473|AY254473.1 Dictyostelium discoideum nucleotide exchange factor RasGEF Q (gefQ) gene, complete cds.   597  0.0  3
AB022770|AB022770.1 Human rotavirus mRNA for NSP2, complete cds.    52  0.006  1
L04534|L04534.1 Rotavirus non-structural protein (NS35) gene, complete cds.    50  0.024  1
X57944|X57944.1 Human rotavirus segment 7 gp33 gene.    50  0.024  1
AC092543|AC092543.3 Homo sapiens BAC clone RP11-291E21 from 4, complete sequence.    42  0.025  4
AX323698|AX323698.1 Sequence 186 from Patent WO0192565.           32  0.032  4
AX278001|AX278001.1 Sequence 164 from Patent WO0177375.           32  0.032  4
AX252049|AX252049.1 Sequence 310 from Patent WO0168911.           32  0.032  4
AF378133|AF378133.1 Plasmodium falciparum clone c-18-4-23 MB2 mRNA, partial cds.    48  0.093  1
AC124140|AC124140.4 Mus musculus clone RP23-257F18, WORKING DRAFT SEQUENCE, 6 ordered pieces.    48  0.093  1
dna update 2003. 9.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000141_1819(CP000141|pid:none) Carboxydothermus hydrogenoforma...    36   0.49
CP000724_3530(CP000724|pid:none) Alkaliphilus metalliredigens QY...    33   2.4
AM494968_122(AM494968|pid:none) Leishmania braziliensis chromoso...    33   4.1
CP000478_3069(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    32   5.4
CP001349_2235(CP001349|pid:none) Methylobacterium nodulans ORS 2...    32   7.1
CP000947_1226(CP000947|pid:none) Haemophilus somnus 2336, comple...    32   9.2
protein update 2009. 3.20
PSORT 

 psg: 0.93  gvh: 0.57  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSC320 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSC320E
Full length Seq. 
>VSC320E.Seq
GTTTTTCATCACATTCACACACATAATATATATTAAAATGTCTTACACTCCAAACTCATT
CGTCGGTGTTTTATATGGTCTTAGCGTTTTATTTGGCATTTCACATGGTGTCGGTAAATT
AAATACCTTCAAATCAATTGCCAAAGAAGATTTTTCAAAAGAAATTAAAACTACTGCTAC
TGCTGAAAAATCAAAAGCATACCAAGAAGGTTTCGAAGCTGGTGTTAAATCAAGTCAACC
AAAAGCAGGAGGTGTCACTTATGGTAGTGAAATCGAAAAACTCATTGCTGAAACCTGTGG
TACCAACCTTTTACAACAAAACTAAAATAAACCAACAACAGTAATATAATAATATAAATA
CAAATTCCACATATTTAAAAAAATAAATCTACAAAAAAAAAAAAAAAAAAAAACATGTAT
AAAACTCAATTTTACGTGTAATTTTATTAT
Length of full length seq. 450