>VSC288 (VSC288Q) /CSM/VS/VSC2-D/VSC288Q.Seq.d/
XXXXXXXXXXAAAACTTTTCAAAATGATTTTATAGAATTATTAGAAGGTTTATTAACATT
AAATCCAAAGGAAAGATTAACAGCTGAACAAGCATTACAATCACCATTTTTTACAAATCA
TCCATTACCATTTAAACCAGAGAATATGCCAGGTTATCAACCAATTCATGTTTTGGAAGC
AGTTCAAAAGAGAGTTCAACAACAACAAGAATTGGAACAACAAAAGTAACAAGAGGAACA
AAAGAAACAACAAGAGGAACAAAAGAAATTAGAAGATCAAAAAAGCAAGAGAAGATGCAA
AAAAGAAACAAGAAGCAAAAGAATTATTACAACAAGAAGATAAAGAAATTAAAGAAAGAT
ATGGTAAACCATCAGATAATAAAGTAACTCGTTTTGAAATTCAACAAAAGAGAGATAAAG
AACAAAAACAAAGAGAAAAAGAACTTGCTTCAAGACCATCCGATCCAAGAGTTGTTGTAG
TTCCAACAACAACAACAACAACAACAACAACAACAACAACCATACATATCACTCCTCCAG
GTATAATAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAATAAAATAAAATATTAATAAT
TAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---klfkmil*ny*kvy*h*iqrkd*qlnkhynhhflqiihyhlnqricqvinqfmfwkq
fkrefnnnknwnnksnkrnkrnnkrnkrn*KIKKAREDAKKKQEAKELLQQEDKEIKERY
GKPSDNKVTRFEIQQKRDKEQKQREKELASRPSDPRVVVVPTTTTTTTTTTTTIHITPPG
IIKKKKNKKKKKNKIKY**lv*kkkkkkkkkkkkk

Frame A:
---klfkmil*ny*kvy*h*iqrkd*qlnkhynhhflqiihyhlnqricqvinqfmfwkq
fkrefnnnknwnnksnkrnkrnnkrnkrn*KIKKAREDAKKKQEAKELLQQEDKEIKERY
GKPSDNKVTRFEIQQKRDKEQKQREKELASRPSDPRVVVVPTTTTTTTTTTTTIHITPPG
IIKKKKNKKKKKNKIKY**lv*kkkkkkkkkkkkk


Frame B:
---nfsk*fyriirrfinikskgkins*tsititifykssiti*treyarlstnscfgss
skesstttrigttkvtrgtkettrgtkeirrskkqekmqkrnkkqknyynkkikklkkdm
vnhqiik*lvlkfnkreiknknkekknllqdhpiqell*fqqqqqqqqqqqqpyisllqv
**kkkkikkkkkik*ninn*fkkkkkkkkkkkkk


Frame C:
---tfqndfielleglltlnpkerltaeqalqspfftnhplpfkpenmpgyqpihvleav
qkrvqqqqeleqqk*qeeqkkqqeeqkkledqkskrrckketrskriittrr*rn*rkiw
*tir**snsf*nstker*rtktkrkrtcfktirsksccssnnnnnnnnnnnnhtyhssry
nkkkkk*kkkkk*nkiliislkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC288 (VSC288Q) /CSM/VS/VSC2-D/VSC288Q.Seq.d/                        367   e-100
VFG516 (VFG516Q) /CSM/VF/VFG5-A/VFG516Q.Seq.d/                        343   2e-93
SFB208 (SFB208Q) /CSM/SF/SFB2-A/SFB208Q.Seq.d/                        343   2e-93
AFK733 (AFK733Q) /CSM/AF/AFK7-B/AFK733Q.Seq.d/                        343   2e-93
AFI641 (AFI641Q) /CSM/AF/AFI6-B/AFI641Q.Seq.d/                        343   2e-93
AFH858 (AFH858Q) /CSM/AF/AFH8-C/AFH858Q.Seq.d/                        343   2e-93
AFH105 (AFH105Q) /CSM/AF/AFH1-A/AFH105Q.Seq.d/                        343   2e-93
AFG131 (AFG131Q) /CSM/AF/AFG1-B/AFG131Q.Seq.d/                        343   2e-93
AFA604 (AFA604Q) /CSM/AF/AFA6-A/AFA604Q.Seq.d/                        343   2e-93
VFG875 (VFG875Q) /CSM/VF/VFG8-D/VFG875Q.Seq.d/                        226   3e-58

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL954675|AL954675.7 Mouse DNA sequence from clone RP24-468P16 on chromosome 4.    48  0.32  2
BZ433011|BZ433011.1 BONOZ61TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONOZ61, DNA sequence.    46  0.54  1
CB310241|CB310241.1 AGENCOURT_11829526 NICHD_Rh_Ov1 Macaca mulatta cDNA clone IMAGE:6896022 5', mRNA sequence.    34  0.64  3
AC144537|AC144537.3 Glycine max clone is-42i18 strain Williams 82 cultivar,, WORKING DRAFT SEQUENCE, 2 ordered pieces.    44  1.7  3
AQ375866|AQ375866.1 RPCI11-146P20.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-146P20, DNA sequence.    34  1.9  2
AE003480|AE003480.3 Drosophila melanogaster chromosome 3L, section 14 of 83 of the complete sequence.    44  2.1  1
AC023680|AC023680.3 Drosophila melanogaster 3L BAC RPCI98-9C2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    44  2.1  1
AC092783|AC092783.2 Homo sapiens chromosome 1 clone RP5-827O9, complete sequence.    44  2.1  1
BH530367|BH530367.1 BOGUV31TR BOGU Brassica oleracea genomic clone BOGUV31, DNA sequence.    44  2.1  1
BH956068|BH956068.1 odh39e06.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    44  2.1  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Y06) RecName: Full=Probable cyclin-dependent serine/threonin...   124   2e-27
CP001574_290(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    57   6e-07
AC140549_25(AC140549|pid:none) Medicago truncatula clone mth2-28...    54   5e-06
EF086105_1(EF086105|pid:none) Picea sitchensis clone WS0278_P15 ...    54   5e-06
T09572(T09572) cdc2-like protein kinase cdc2MsC - alfalfa  &X973...    52   1e-05
AC155344_23(AC155344|pid:none) Brassica rapa subsp. pekinensis c...    52   1e-05
BT004162_1(BT004162|pid:none) Arabidopsis thaliana clone RAFL15-...    52   2e-05
AC166741_19(AC166741|pid:none) Brassica rapa subsp. pekinensis c...    52   2e-05
(Q6BV06) RecName: Full=Serine/threonine-protein kinase BUR1;    ...    52   2e-05
(Q9LFT8) RecName: Full=Cyclin-dependent kinase C-1;          Sho...    51   3e-05

 psg: 0.43  gvh: 0.04  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.40  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for VSC288 is nuc

>VSC288Z.Seq
----------AAAACTTTTCAAAATGATTTTATAGAATTATTAGAAGGTTTATTAACATT
AAATCCAAAGGAAAGATTAACAGCTGAACAAGCATTACAATCACCATTTTTTACAAATCA
TCCATTACCATTTAAACCAGAGAATATGCCAGGTTATCAACCAATTCATGTTTTGGAAGC
AGTTCAAAAGAGAGTTCAACAACAACAAGAATTGGAACAACAAAAGTAACAAGAGGAACA
AAAGAAACAACAAGAGGAACAAAAGAAATTAGAAGATCAAAAAAGCAAGAGAAGATGCAA
AAAAGAAACAAGAAGCAAAAGAATTATTACAACAAGAAGATAAAGAAATTAAAGAAAGAT
ATGGTAAACCATCAGATAATAAAGTAACTCGTTTTGAAATTCAACAAAAGAGAGATAAAG
AACAAAAACAAAGAGAAAAAGAACTTGCTTCAAGACCATCCGATCCAAGAGTTGTTGTAG
TTCCAACAACAACAACAACAACAACAACAACAACAACAACCATACATATCACTCCTCCAG
GTATAATAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAATAAAATAAAATATTAATAAT
TAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA