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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSC284
Library VS
(Link to library)
Clone ID VSC284
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06415-1
Original site URL
Representative seq. ID VSC284E
(Link to Original site)
Representative DNA sequence 
>VSC284 (VSC284Q) /CSM/VS/VSC2-D/VSC284Q.Seq.d/
AGGAAATGGTGTAACAAATTTTAACAATATGAGGGTTACAATTACAAAGCCAGCAGTTGN
TCCCCCCGCACCCTTGGTTAAGCAACCAAAAAAAAAAACCAAAATCTTTTTCTCCAAAGA
TTTGCAACCAAAGAAAAAAAAAAAAAAAAAAAAAAAATATTTTAAAATAAAATCCATCAA
ATTTGATCACATAATTATTATTATTATCAATATTATTATTATTATTATTTTTAAATAATT
TTCACACCAAGAAAAGAAAAAAATAAAATAAAATAAAATAAAATAATAATAAAAAATTAA
GTTTTACAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 2000. 9.22
Translated Amino Acid sequence 
GNGVTNFNNMRVTITKPAVXPPAPLVKQPKKKTKIFFSKDLQPKKKKKKKKKYFKIKSIK
FDHIIIIIINIIIIIIFK*fshqekkkik*nkik***kikfyktkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
rkwcnkf*qyegynykassxsprtlg*atkkknqnlflqrfatkekkkkkkkif*nkihq
i*shnyyyyqyyyyyyf*iiftprkeknkik*nkiiikn*vlqnkkkkkkkkkkkkkkk


Frame B:
GNGVTNFNNMRVTITKPAVXPPAPLVKQPKKKTKIFFSKDLQPKKKKKKKKKYFKIKSIK
FDHIIIIIINIIIIIIFK*fshqekkkik*nkik***kikfyktkkkkkkkkkkkkkk


Frame C:
emv*qilti*glqlqsqqlxpphpwlsnqkkkpksfspkicnqrkkkkkkknilk*npsn
lit*llllsilllllflnnfhtkkrkk*nkik*nnnkklsftkqkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC284 (VSC284Q) /CSM/VS/VSC2-D/VSC284Q.Seq.d/                        192   2e-48
VSB868 (VSB868Q) /CSM/VS/VSB8-C/VSB868Q.Seq.d/                        145   5e-34
VSJ150 (VSJ150Q) /CSM/VS/VSJ1-C/VSJ150Q.Seq.d/                         32   5.4
VHP592 (VHP592Q) /CSM/VH/VHP5-D/VHP592Q.Seq.d/                         32   5.4
VHP518 (VHP518Q) /CSM/VH/VHP5-A/VHP518Q.Seq.d/                         32   5.4
VHP514 (VHP514Q) /CSM/VH/VHP5-A/VHP514Q.Seq.d/                         32   5.4
VHK226 (VHK226Q) /CSM/VH/VHK2-B/VHK226Q.Seq.d/                         32   5.4
VHJ164 (VHJ164Q) /CSM/VH/VHJ1-C/VHJ164Q.Seq.d/                         32   5.4
VHC506 (VHC506Q) /CSM/VH/VHC5-A/VHC506Q.Seq.d/                         32   5.4
VHB170 (VHB170Q) /CSM/VH/VHB1-C/VHB170Q.Seq.d/                         32   5.4
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC118686|AC118686.6 Mus musculus clone RP23-402P24, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42  4.5  1
BE641986|BE641986.1 Cri2_4_M24_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_4_M24 5', mRNA sequence.    42  4.5  1
AC074315|AC074315.46 Mus musculus clone rp23-445c23 map 15 strain C57BL/6J, WORKING DRAFT SEQUENCE, 28 unordered pieces.    42  4.5  1
AL645664|AL645664.8 Mouse DNA sequence from clone RP23-417P22 on chromosome 13.    42  4.5  1
AC098358|AC098358.7 Rattus norvegicus clone CH230-2B6, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  7.3  2
AX356404|AX356404.1 Sequence 38 from Patent WO0181622.            34  7.6  2
AX251140|AX251140.1 Sequence 108 from Patent WO0168912.           34  7.6  2
AC141032|AC141032.1 Rattus norvegicus clone CH230-485C11, *** SEQUENCING IN PROGRESS ***, 63 unordered pieces.    40     18  1
AC018919|AC018919.13 Homo sapiens 3 BAC RP11-88P6 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    40     18  1
AC111820|AC111820.5 Rattus norvegicus clone CH230-51H17, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40     18  1
dna update 2003. 8.17
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 261,717,937
protein update 2009. 7.29
PSORT 

 psg: 0.79  gvh: 0.22  alm: 0.15  top: 0.17  tms: 0.07  mit: 0.32  mip: 0.00
 nuc: 0.69  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VSC284 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSC284E
Full length Seq. 
>VSC284E.Seq
AGGAAATGGTGTAACAAATTTTAACAATATGAGGGTTACAATTACAAAGCCAGCAGTTGN
TCCCCCCGCACCCTTGGTTAAGCAACCAAAAAAAAAAACCAAAATCTTTTTCTCCAAAGA
TTTGCAACCAAAGAAAAAAAAAAAAAAAAAAAAAAAATATTTTAAAATAAAATCCATCAA
ATTTGATCACATAATTATTATTATTATCAATATTATTATTATTATTATTTTTAAATAATT
TTCACACCAAGAAAAGAAAAAAATAAAATAAAATAAAATAAAATAATAATAAAAAATTAA
GTTTTACAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 357