>VSC268 (VSC268Q) /CSM/VS/VSC2-C/VSC268Q.Seq.d/
XXXXXXXXXXAAAAAAAAACAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAA
ATTTATAAAAATTTAAGCATATATAATAAAAGGGACAAATCAAATTTTTTTTTTTTTTTT
TTTTTATAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

---kknnlkkkkkkkkkkqnl*kfkhi**KGQIKFFFFFFFITKKKKKKKKKKKKKKKKK
KKKKK

Frame A:
---kknnlkkkkkkkkkkqnl*kfkhi**KGQIKFFFFFFFITKKKKKKKKKKKKKKKKK
KKKKK


Frame B:
---kkti*kkkkkkkkknkiyknlsiynkrdksnffffffl*lkkkkkkkkkkkkkkkkk
kkkk


Frame C:
---kkqfkkkkkkkkkktkfiki*ayiikgtnqiffffffyn*kkkkkkkkkkkkkkkkk
kkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC268 (VSC268Q) /CSM/VS/VSC2-C/VSC268Q.Seq.d/                         96   2e-19
VSJ311 (VSJ311Q) /CSM/VS/VSJ3-A/VSJ311Q.Seq.d/                         34   0.72
VSF653 (VSF653Q) /CSM/VS/VSF6-C/VSF653Q.Seq.d/                         34   0.72
VFJ134 (VFJ134Q) /CSM/VF/VFJ1-B/VFJ134Q.Seq.d/                         34   0.72
SSB213 (SSB213Q) /CSM/SS/SSB2-A/SSB213Q.Seq.d/                         34   0.72
FC-IC1218 (FC-IC1218Q) /CSM/FC-IC/FC-IC1218Q.Seq.d/                    34   0.72
FC-IC1207 (FC-IC1207Q) /CSM/FC-IC/FC-IC1207Q.Seq.d/                    34   0.72
VSE280 (VSE280Q) /CSM/VS/VSE2-D/VSE280Q.Seq.d/                         32   2.9
VFK848 (VFK848Q) /CSM/VF/VFK8-B/VFK848Q.Seq.d/                         32   2.9
SSK731 (SSK731Q) /CSM/SS/SSK7-B/SSK731Q.Seq.d/                         32   2.9

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM165914|BM165914.1 EST568437 PyBS Plasmodium yoelii yoelii cDNA clone PYCMX63 5' end, mRNA sequence.    34  0.36  2
BX248521|BX248521.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-243C14.    40  0.40  2
BM162756|BM162756.1 EST565279 PyBS Plasmodium yoelii yoelii cDNA clone PYCKW51 5' end, mRNA sequence.    34  0.50  2
BM159888|BM159888.1 EST562411 PyBS Plasmodium yoelii yoelii cDNA clone PYCJK13 5' end, mRNA sequence.    34  0.50  2
BF295894|BF295894.1 029PbF08 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    34  0.53  2
BF295318|BF295318.1 022PbA10 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    34  0.56  2
BH497988|BH497988.1 BOHES77TR BOHE Brassica oleracea genomic clone BOHES77, DNA sequence.    32  1.6  2
AC110882|AC110882.10 Mus musculus clone RP23-287A10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    36  1.9  2
BH673986|BH673986.1 BOMDI22TR BO_2_3_KB Brassica oleracea genomic clone BOMDI22, DNA sequence.    32  2.0  2
BZ506354|BZ506354.1 BONRG40TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRG40, DNA sequence.    32  2.2  2

 ***** No hits found ******

Lambda     K      H
   0.293    0.112    0.286

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 25,733,345

 psg: 1.06  gvh: 0.22  alm: 0.56  top: 1.33  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 2.01  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VSC268 is nuc

>VSC268Z.Seq
----------AAAAAAAAACAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAA
ATTTATAAAAATTTAAGCATATATAATAAAAGGGACAAATCAAATTTTTTTTTTTTTTTT
TTTTTATAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA