VSC267
Library VS
(Link to library)
Clone ID VSC267
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15118-1
Original site URL
Representative seq. ID VSC267Z
(Link to Original site)
Representative DNA sequence
>VSC267 (VSC267Q) /CSM/VS/VSC2-C/VSC267Q.Seq.d/
XXXXXXXXXXGTGCAACCTCATTACTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGT
TTAGCTGCTGATGTTGGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAACTGTATC
TCTTCAATCTACAAGAGAGACGGTTTAATCGGTTTATACCGTGGTTTTGGTGTATCTGTC
GGAGGTATCTTTGTCTACAGAGCTGCTTTCTTTGGTGGTTACGATACTGCTAAAGGAATT
TTATTAGGTGAAAACAACAAGAAAGCTTCATTCTGGGCTTCATGGGGTATCGCACAAGTT
GTCACTACCATCGCTGGTGTAGTCAGCTACCCATTCGATACTGTTCGTAGAAGAATGATG
ATGCAAGCCGGTCGTGCTGATATTCTTTATTCAAGCACTTGGGATTGTTGGGTAAAGATT
GCCACCCGTGAAGGTCCAACTGCCTTCTTCAAAGGTGCTTTATCAAATGCCATCAGAGGT
TCAGGTGGTGCTTTAGTTTTAGTTATTTATGATGAAATCCAAAAACTTATGGGTTTTGAA
GGTGGTGTTGGTTCTGAATAAGAAAATCCGCAAGAAAAAAAACAGGATTTTAACTAAAAA
sequence update 2000. 9.22
Translated Amino Acid sequence
---ATSLLFVYPLDFARTRLAADVGTGSARQFTGLGNCISSIYKRDGLIGLYRGFGVSVG
GIFVYRAAFFGGYDTAKGILLGENNKKASFWASWGIAQVVTTIAGVVSYPFDTVRRRMMM
QAGRADILYSSTWDCWVKIATREGPTAFFKGALSNAIRGSGGALVLVIYDEIQKLMGFEG
GVGSE*enpqekkqdfn*k


Translated Amino Acid sequence (All Frames)
Frame A:
---cnlitlclpirfcpysfsc*cwywfsssihwfr*lylfnlqerrfnrfipwfwcicr
rylclqscflwwlryc*rnfir*kqqesfilgfmgyrtschyhrwcsqlpirycs*kndd
asrsc*yslfkhlgllgkdchp*rsncllqrcfikchqrfrwcfsfsyl**npktygf*r
wcwf*irksarkktgf*lk


Frame B:
---ATSLLFVYPLDFARTRLAADVGTGSARQFTGLGNCISSIYKRDGLIGLYRGFGVSVG
GIFVYRAAFFGGYDTAKGILLGENNKKASFWASWGIAQVVTTIAGVVSYPFDTVRRRMMM
QAGRADILYSSTWDCWVKIATREGPTAFFKGALSNAIRGSGGALVLVIYDEIQKLMGFEG
GVGSE*enpqekkqdfn*k


Frame C:
---qphyslfth*ilpvlv*llmlvlvqlvnslv*vtvslqstretv*svytvvlvylse
vslstellslvvtillkefy*vkttrklhsglhgvshklslpslv*sathsilfvee**c
kpvvliffiqalgivg*rlppvkvqlpsskvlyqmpsevqvvl*f*lfmmksknlwvlkv
vlvlnkkirkkknriltk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSC267 (VSC267Q) /CSM/VS/VSC2-C/VSC267Q.Seq.d/ 1122 0.0
SSM245 (SSM245Q) /CSM/SS/SSM2-B/SSM245Q.Seq.d/ 1122 0.0
SSL639 (SSL639Q) /CSM/SS/SSL6-B/SSL639Q.Seq.d/ 1122 0.0
SSJ579 (SSJ579Q) /CSM/SS/SSJ5-D/SSJ579Q.Seq.d/ 1122 0.0
SSG306 (SSG306Q) /CSM/SS/SSG3-A/SSG306Q.Seq.d/ 1122 0.0
SSF682 (SSF682Q) /CSM/SS/SSF6-D/SSF682Q.Seq.d/ 1122 0.0
SSF440 (SSF440Q) /CSM/SS/SSF4-B/SSF440Q.Seq.d/ 1122 0.0
FCL-AA23 (FCL-AA23Q) /CSM/FCL/FCL-AA/FCL-AA23Q.Seq.d/ 1122 0.0
VSA479 (VSA479Q) /CSM/VS/VSA4-D/VSA479Q.Seq.d/ 1118 0.0
SSC144 (SSC144Q) /CSM/SS/SSC1-B/SSC144Q.Seq.d/ 1118 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF039211|AF039211.1 Dictyostelium discoideum ADP/ATP translocase mRNA, complete cds. 1118 0.0 1
AF100676|AF100676.1 Dictyostelium discoideum ADP/ATP translocase gene, complete cds. 763 0.0 2
AW057366|AW057366.1 ca02g02.x1 C elegans fem3 Q23 S1 Caenorhabditis elegans cDNA 3' similar to gb:T01B11.4 (ELEGANS);WP:T01B11.4 CE12898 ADP/ATP TRANSLOCASE ;, mRNA sequence. 54 9e-07 3
BI320483|BI320483.1 sah56b01.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-2353 5' similar to TR:O49447 O49447 ADP, ATP CARRIER-LIKE PROTEIN. ;, mRNA sequence. 40 2e-06 3
AW509174|AW509174.1 sh92b04.y1 Gm-c1016 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1016-7592 5' similar to TR:O49447 O49447 ADP, ATP CARRIER-LIKE PROTEIN. ;, mRNA sequence. 40 2e-06 3
AW395111|AW395111.1 sh40a06.y1 Gm-c1017 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1017-4139 5' similar to TR:O49447 O49447 ADP, ATP CARRIER-LIKE PROTEIN. ;, mRNA sequence. 40 2e-06 3
BU082881|BU082881.1 saq39h06.y1 Gm-c1045 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1045-7283 5' similar to TR:O49447 O49447 ADP, ATP CARRIER-LIKE PROTEIN. ;, mRNA sequence. 40 3e-06 3
BM057657|BM057657.1 2173-35 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2173-35, mRNA sequence. 38 3e-06 4
AV955771|AV955771.1 Ciona intestinalis cDNA, clone:cilv10g07, 5' end, single read. 36 3e-06 4
BW209505|BW209505.1 Ciona intestinalis cDNA, clone:cieg061f05, 5' end, single read. 36 4e-06 4
dna update 2003. 8.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O97470) RecName: Full=Mitochondrial substrate carrier family pr... 367 e-100
AF424642_1(AF424642|pid:none) Phytophthora infestans clone MY-03... 246 4e-64
AY725780_1(AY725780|pid:none) Oncometopia nigricans putative mit... 241 1e-62
(Q9VZ70) RecName: Full=ADP,ATP carrier protein; AltName: Full=AD... 239 6e-62
DQ874397_1(DQ874397|pid:none) Pacifastacus leniusculus ATP/ADP t... 238 1e-61
AY227000_1(AY227000|pid:none) Bombyx mori ADP/ATP translocase (A... 237 2e-61
EU093076_1(EU093076|pid:none) Monochamus alternatus adenine nucl... 236 4e-61
(P02722) RecName: Full=ADP/ATP translocase 1; AltName: Full=Aden... 235 8e-61
BC102994_1(BC102994|pid:none) Bos taurus solute carrier family 2... 235 8e-61
AK343093_1(AK343093|pid:none) Acyrthosiphon pisum ACYPI002892 mR... 233 3e-60
protein update 2009. 7.29
PSORT

psg: 0.75 gvh: 0.51 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for VSC267 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSC267Z
3' end seq.
>VSC267Z.Seq
----------GTGCAACCTCATTACTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGT
TTAGCTGCTGATGTTGGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAACTGTATC
TCTTCAATCTACAAGAGAGACGGTTTAATCGGTTTATACCGTGGTTTTGGTGTATCTGTC
GGAGGTATCTTTGTCTACAGAGCTGCTTTCTTTGGTGGTTACGATACTGCTAAAGGAATT
TTATTAGGTGAAAACAACAAGAAAGCTTCATTCTGGGCTTCATGGGGTATCGCACAAGTT
GTCACTACCATCGCTGGTGTAGTCAGCTACCCATTCGATACTGTTCGTAGAAGAATGATG
ATGCAAGCCGGTCGTGCTGATATTCTTTATTCAAGCACTTGGGATTGTTGGGTAAAGATT
GCCACCCGTGAAGGTCCAACTGCCTTCTTCAAAGGTGCTTTATCAAATGCCATCAGAGGT
TCAGGTGGTGCTTTAGTTTTAGTTATTTATGATGAAATCCAAAAACTTATGGGTTTTGAA
GGTGGTGTTGGTTCTGAATAAGAAAATCCGCAAGAAAAAAAACAGGATTTTAACTAAAAA
Length of 3' end seq. 590
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -