>VSC263 (VSC263Q) /CSM/VS/VSC2-C/VSC263Q.Seq.d/
XXXXXXXXXXGAAGGTATGCACACTGGTCAATTTGTTTTCGCTGGTAAAAAAGCCACCCT
CACCATTGGTAACATCCTCCCAATTGGTAAACTCCCAGAAGGTACCATCATTTGCAACGT
TGAAGAAAAACTCGGTGATTGTGGTGCTGTTGCTCGTTGTTCAGGTAACTATGCTACCAT
CGTCTCACACAACCCAGATGAAGGTGTTACCCGTATCAAATTACCATCAGGTTCAAAGAA
GAACGTTTCTTCATTAGCTCGTGCTATGATCGGTATTGTTGCCGGTGGTGGTCGTATCGA
TAAACCAATGCTCAAAGCTGGTCGTGCTTTCCACAAATACAGAGTTAAGAAGAATAACTG
GCCAAAGGTTAGAGGTGTTGCTATGAATCCAGTAGAACATCCACACGGTGGTGGTAATCA
TCAACATGTTGGTCATGCCACTACAACCAAGGGAGACGATCCAGCTGGTAAGAAAGTTGG
TTTAATTGCTGCCCGTCGTACTGGTCGTTTAAGAGGAACTAAAAACATTTCAGAATAAAC
AGCATTCAAAACCTTTTATAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---GMHTGQFVFAGKKATLTIGNILPIGKLPEGTIICNVEEKLGDCGAVARCSGNYATIV
SHNPDEGVTRIKLPSGSKKNVSSLARAMIGIVAGGGRIDKPMLKAGRAFHKYRVKKNNWP
KVRGVAMNPVEHPHGGGNHQHVGHATTTKGDDPAGKKVGLIAARRTGRLRGTKNISE*ta
fktfykykkkkkkkkk

Frame A:
---kvctlvnlfslvkkppsplvtssqlvnsqkvpsfatlkknsvivvlllvvqvtmlps
shttqmkvlpvsnyhqvqrrtflh*lvl*svllpvvvvsinqcsklvvlstntelrritg
qrlevll*iq*nihtvvviinmlvmplqpretiqlvrklv*llpvvlvv*eelktfqnkq
hskpfinikkkkkkkkk


Frame B:
---ryahwsicfrw*kshphhw*hppnw*tprryhhlqr*rktr*lwcccslfr*lcyhr
ltqpr*rcypyqitirfkeerffisscydryccrwwsyr*tnaqswscfpqiqs*ee*la
kg*rccyessrtstrww*sstcwschynqgrrssw*eswfnccpsywsfkrn*khfrins
iqnll*i*kkkkkkkkk


Frame C:
---GMHTGQFVFAGKKATLTIGNILPIGKLPEGTIICNVEEKLGDCGAVARCSGNYATIV
SHNPDEGVTRIKLPSGSKKNVSSLARAMIGIVAGGGRIDKPMLKAGRAFHKYRVKKNNWP
KVRGVAMNPVEHPHGGGNHQHVGHATTTKGDDPAGKKVGLIAARRTGRLRGTKNISE*ta
fktfykykkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC263 (VSC263Q) /CSM/VS/VSC2-C/VSC263Q.Seq.d/                       1100   0.0
VSE883 (VSE883Q) /CSM/VS/VSE8-D/VSE883Q.Seq.d/                       1090   0.0
SLC245 (SLC245Q) /CSM/SL/SLC2-B/SLC245Q.Seq.d/                       1088   0.0
SLB881 (SLB881Q) /CSM/SL/SLB8-D/SLB881Q.Seq.d/                       1088   0.0
SLB815 (SLB815Q) /CSM/SL/SLB8-A/SLB815Q.Seq.d/                       1088   0.0
FC-BS20 (FC-BS20Q) /CSM/FC/FC-BS/FC-BS20Q.Seq.d/                     1084   0.0
FC-BO14 (FC-BO14Q) /CSM/FC/FC-BO/FC-BO14Q.Seq.d/                     1084   0.0
VSH273 (VSH273Q) /CSM/VS/VSH2-D/VSH273Q.Seq.d/                       1074   0.0
VSB214 (VSB214Q) /CSM/VS/VSB2-A/VSB214Q.Seq.d/                       1074   0.0
VSD483 (VSD483Q) /CSM/VS/VSD4-D/VSD483Q.Seq.d/                       1070   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.  1092  0.0  1
X15710|X15710.1 Dictyostelium discoideum mRNA for ribosomal protein L2.   385  0.0  5
BI704050|BI704050.1 kt78f10.y4 Strongyloides ratti L2 SL1 TOPO v2 Strongyloides ratti cDNA 5' similar to TR:Q9V3G1 Q9V3G1 CG1263 PROTEIN. ;, mRNA sequence.   115  9e-43  3
BQ479216|BQ479216.1 ku29e08.y1 Strongyloides ratti PA female naive SL1 TOPO v1 Strongyloides ratti cDNA similar to TR:Q9V3G1 Q9V3G1 CG1263 PROTEIN. ;, mRNA sequence.   115  9e-43  3
BI773235|BI773235.1 kt06g12.y1 Strongyloides ratti L3 adult SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q9V3G1 Q9V3G1 CG1263 PROTEIN. ;, mRNA sequence.   115  1e-42  3
BQ479322|BQ479322.1 ku32g10.y1 Strongyloides ratti PA female naive SL1 TOPO v1 Strongyloides ratti cDNA similar to TR:Q9V3G1 Q9V3G1 CG1263 PROTEIN. ;, mRNA sequence.   115  1e-42  3
BQ479192|BQ479192.1 ku28g04.y1 Strongyloides ratti PA female naive SL1 TOPO v1 Strongyloides ratti cDNA similar to TR:Q9V3G1 Q9V3G1 CG1263 PROTEIN. ;, mRNA sequence.   115  1e-42  3
BQ479234|BQ479234.1 ku30d08.y1 Strongyloides ratti PA female naive SL1 TOPO v1 Strongyloides ratti cDNA similar to TR:Q9V3G1 Q9V3G1 CG1263 PROTEIN. ;, mRNA sequence.   115  6e-41  2
BI773231|BI773231.1 kt03a04.y1 Strongyloides ratti L1 SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q9V3G1 Q9V3G1 CG1263 PROTEIN. ;, mRNA sequence.   115  6e-41  2
BQ479440|BQ479440.1 ku36f01.y1 Strongyloides ratti PA female naive SL1 TOPO v1 Strongyloides ratti cDNA similar to TR:Q9V3G1 Q9V3G1 CG1263 PROTEIN. ;, mRNA sequence.    88  2e-38  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P13023) RecName: Full=60S ribosomal protein L8; AltName: Full=6...   358   6e-98
EF103429_1(EF103429|pid:none) Haliotis discus discus ribosomal p...   278   1e-73
BT078708_1(BT078708|pid:none) Lepeophtheirus salmonis Pacific fo...   274   2e-72
FJ376460_1(FJ376460|pid:none) Spea hammondii ribosomal protein L...   273   2e-72
(P41116) RecName: Full=60S ribosomal protein L8;  &BC043823_1(BC...   273   2e-72
DQ252497_1(DQ252497|pid:none) Solanum tuberosum clone 068C11 rib...   273   3e-72
EF191793_1(EF191793|pid:none) Taeniopygia guttata clone 0061P002...   273   3e-72
AK168332_1(AK168332|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK...   272   4e-72
AY890287_1(AY890287|pid:none) Synthetic construct Homo sapiens c...   272   6e-72
(Q90YW1) RecName: Full=60S ribosomal protein L8;  &AF401561_1(AF...   272   6e-72

 psg: 0.87  gvh: 0.45  alm: 0.44  top: 0.63  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: nuclear

>> prediction for VSC263 is cyt

>VSC263Z.Seq
----------GAAGGTATGCACACTGGTCAATTTGTTTTCGCTGGTAAAAAAGCCACCCT
CACCATTGGTAACATCCTCCCAATTGGTAAACTCCCAGAAGGTACCATCATTTGCAACGT
TGAAGAAAAACTCGGTGATTGTGGTGCTGTTGCTCGTTGTTCAGGTAACTATGCTACCAT
CGTCTCACACAACCCAGATGAAGGTGTTACCCGTATCAAATTACCATCAGGTTCAAAGAA
GAACGTTTCTTCATTAGCTCGTGCTATGATCGGTATTGTTGCCGGTGGTGGTCGTATCGA
TAAACCAATGCTCAAAGCTGGTCGTGCTTTCCACAAATACAGAGTTAAGAAGAATAACTG
GCCAAAGGTTAGAGGTGTTGCTATGAATCCAGTAGAACATCCACACGGTGGTGGTAATCA
TCAACATGTTGGTCATGCCACTACAACCAAGGGAGACGATCCAGCTGGTAAGAAAGTTGG
TTTAATTGCTGCCCGTCGTACTGGTCGTTTAAGAGGAACTAAAAACATTTCAGAATAAAC
AGCATTCAAAACCTTTTATAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA