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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSC244
Library VS
(Link to library)
Clone ID VSC244
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12315-1
Original site URL
Representative seq. ID VSC244E
(Link to Original site)
Representative DNA sequence 
>VSC244 (VSC244Q) /CSM/VS/VSC2-B/VSC244Q.Seq.d/
ACAAAATGTCAGATATTATTGCAAGAGGTAACGTCGAAAACGGTGACAAACTTTTCAAAG
CAAGATGTGCTCAATGTCACACCACTGCTAATGGTGCACCAAACAAACAAGGTCCAAATC
TTTACGGTTTATTCGGTCGTAAATCAGGTTCCGTCGCTGGTTATGCCTACTCTGACGCCA
ACAAAAACGCTGGTATCATGTGGGGTGAACAAACTCTCTTTGATTACTTAGAAAATCCAA
AGAAATACATTCCAAAGACTAAAATGGCCTTTGCTGGTTTCAAATCTGAACAAGATAGAG
CTGATGTTGTCGCTTACCTTGAACAATCAACTAAATAAACACACAATATAAATAAACTAC
TCAACTAAATAAACAC
sequence update 2000. 9.22
Translated Amino Acid sequence 
KMSDIIARGNVENGDKLFKARCAQCHTTANGAPNKQGPNLYGLFGRKSGSVAGYAYSDAN
KNAGIMWGEQTLFDYLENPKKYIPKTKMAFAGFKSEQDRADVVAYLEQSTK*thninkll
n*in
Translated Amino Acid sequence (All Frames) 
Frame A:
tkcqillqevtsktvtnfskqdvlnvtpllmvhqtnkvqiftvysvvnqvpslvmptltp
tktlvscgvnklslit*kiqrntfqrlkwpllvsnlnkielmlsltlnnqlnkhti*iny
stk*t


Frame B:
qnvryyckr*rrkr*qtfqskmcsmshhc*wctkqtrskslrfirs*irfrrwlcll*rq
qkrwyhvg*tnsl*llrkskeihskd*nglcwfqi*tr*s*ccrlp*tin*intqyk*tt
qlnkh


Frame C:
KMSDIIARGNVENGDKLFKARCAQCHTTANGAPNKQGPNLYGLFGRKSGSVAGYAYSDAN
KNAGIMWGEQTLFDYLENPKKYIPKTKMAFAGFKSEQDRADVVAYLEQSTK*thninkll
n*in
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI528 (VSI528Q) /CSM/VS/VSI5-B/VSI528Q.Seq.d/                        745   0.0
VSC244 (VSC244Q) /CSM/VS/VSC2-B/VSC244Q.Seq.d/                        745   0.0
VHC784 (VHC784Q) /CSM/VH/VHC7-D/VHC784Q.Seq.d/                        745   0.0
SSC532 (SSC532Q) /CSM/SS/SSC5-B/SSC532Q.Seq.d/                        745   0.0
VSH757 (VSH757Q) /CSM/VS/VSH7-C/VSH757Q.Seq.d/                        743   0.0
VSB594 (VSB594Q) /CSM/VS/VSB5-D/VSB594Q.Seq.d/                        743   0.0
VSD454 (VSD454Q) /CSM/VS/VSD4-C/VSD454Q.Seq.d/                        739   0.0
VSD416 (VSD416Q) /CSM/VS/VSD4-A/VSD416Q.Seq.d/                        739   0.0
VFH165 (VFH165Q) /CSM/VF/VFH1-C/VFH165Q.Seq.d/                        726   0.0
VSB875 (VSB875Q) /CSM/VS/VSB8-D/VSB875Q.Seq.d/                        712   0.0
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.   367  e-176  3
AX536814|AX536814.1 Sequence 415 from Patent WO02064766.          56  3e-05  2
AF047169|AF047169.1 Pachysolen tannophilus cytochrome c (CYC1) gene, complete cds.    48  3e-05  2
U57896|U57896.1 Candida albicans cytochrome C gene (CYC1) gene, complete cds.    56  7e-05  2
AK062980|AK062980.1 Oryza sativa (japonica cultivar-group) cDNA clone:001-109-F02, full insert sequence.    48  5e-04  2
AB106615|AB106615.1 Liriomyza bryoniae cytc gene for cytochrome c, partial sequence, country:Japan:Kyoto.    32  0.009  3
AY245197|AY245197.1 Diaeretiella rapae cytochrome c-like gene, partial sequence; nuclear gene for mitochondrial product.    46  0.018  2
BQ582749|BQ582749.1 E012281-024-007-F10-SP6 MPIZ-ADIS-024-inflorescence Beta vulgaris cDNA clone 024-007-F10 5-PRIME, mRNA sequence.    38  0.11  2
AB106611|AB106611.1 Liriomyza sativae cytc gene for cytochrome c, partial sequence, country:Japan:Okinawa.    30  0.12  3
BQ476583|BQ476583.1 curculio2h12.g Curculio glandium cDNA Curculio glandium cDNA clone curculio2h12 3', mRNA sequence.    46  0.30  1
dna update 2003. 8.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869N1) RecName: Full=Cytochrome c;  &AC117080_15(AC117080|pid:...   207   9e-53
(P00057) RecName: Full=Cytochrome c;  &CCCS(B00047;A00050)            151   6e-36
(P00058) RecName: Full=Cytochrome c;  &CCCN(A00051)                   150   1e-35
(P00030) RecName: Full=Cytochrome c;  &CCWB(A00027)                   149   2e-35
(P00072) RecName: Full=Cytochrome c;  &CCFA(A00064)                   149   2e-35
(P29380) RecName: Full=Cytochrome c;  &M85253_1(M85253|pid:none)...   147   9e-35
(P00049) RecName: Full=Cytochrome c;  &CCUS(A00042)                   147   1e-34
(P00061) RecName: Full=Cytochrome c;  &CCPO(A04610;A00053)            147   1e-34
(P00063) RecName: Full=Cytochrome c;  &CCBX(A00055)                   147   1e-34
AB294511_1(AB294511|pid:none) Branchiostoma belcheri cytc mRNA f...   146   2e-34
protein update 2009. 7.29
PSORT 

 psg: 0.43  gvh: 0.42  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VSC244 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSC244E
Full length Seq. 
>VSC244E.Seq
ACAAAATGTCAGATATTATTGCAAGAGGTAACGTCGAAAACGGTGACAAACTTTTCAAAG
CAAGATGTGCTCAATGTCACACCACTGCTAATGGTGCACCAAACAAACAAGGTCCAAATC
TTTACGGTTTATTCGGTCGTAAATCAGGTTCCGTCGCTGGTTATGCCTACTCTGACGCCA
ACAAAAACGCTGGTATCATGTGGGGTGAACAAACTCTCTTTGATTACTTAGAAAATCCAA
AGAAATACATTCCAAAGACTAAAATGGCCTTTGCTGGTTTCAAATCTGAACAAGATAGAG
CTGATGTTGTCGCTTACCTTGAACAATCAACTAAATAAACACACAATATAAATAAACTAC
TCAACTAAATAAACAC
Length of full length seq. 376