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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSC232
Library VS
(Link to library)
Clone ID VSC232
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04476-1
Original site URL
Representative seq. ID VSC232E
(Link to Original site)
Representative DNA sequence 
>VSC232 (VSC232Q) /CSM/VS/VSC2-B/VSC232Q.Seq.d/
CAAAAAAAAAAAAAAAGAACTGTATATTTTCAATCGATAAACTTTTTTTTTTTTTTCAAA
GATTCAATAAATAGTGTTATAGTTTTGTAACAAAACCTTAAAAAAAAAGGAAACATTTAC
AAATATATATATATAGATTTAAAGNTGAATAGCAAACAAATTCTTTCATTAAGTGCATTC
GCCATGACAATTGCCACAGCTGCTGCTGGTAACTGGAATGCTGGTGACACAATTGCCTTA
TTAATTGGTATTGCCATGTTCTTTGTTCTCCTTTTAGCTCTCTTAGGTTGGATCAGCAGA
AGACAATAAATTTAAACAACCGCAAATAACGAATTTTTATTNGAATAAAAGAAAAAGAAA
AAGAAAAACAATAAGAAAATAAAAAATAATAAAAAAAAATAATAAAAAAAAAAAAAAAAA
AAAAAAATGTCAAATTAGGAGTTA
sequence update 2000. 9.22
Translated Amino Acid sequence 
qkkkkrtvyfqsinfffffkdsinsvivl*QNLKKKGNIYKYIYIDLKXNSKQILSLSAF
AMTIATAAAGNWNAGDTIALLIGIAMFFVLLLALLGWISRRQ*i*ttanneflxe*kkkk
kknnkkiknnkkk**kkkkkkkmsn*el
Translated Amino Acid sequence (All Frames) 
Frame A:
qkkkkrtvyfqsinfffffkdsinsvivl*QNLKKKGNIYKYIYIDLKXNSKQILSLSAF
AMTIATAAAGNWNAGDTIALLIGIAMFFVLLLALLGWISRRQ*i*ttanneflxe*kkkk
kknnkkiknnkkk**kkkkkkkmsn*el


Frame B:
kkkkkelyifnr*tffffskiq*ivl*fcnktlkkketftniyi*i*x*iankffh*vhs
p*qlpqlllvtgmlvtqlpy*lvlpcslfsf*ls*vgsaednkfkqpqitnfyxnkrkrk
rktirk*kiikknnkkkkkkkkcqirs


Frame C:
kkkkkncifsidklffffqrfnk*cysfvtkp*kkrkhlqiyiyrfkxe*qtnsfikcir
hdnchsccw*lecw*hnclinwychvlcspfsslrldqqktinlnnrk*rifixikekek
ekq*enkk**kkiikkkkkkknvklgv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC232 (VSC232Q) /CSM/VS/VSC2-B/VSC232Q.Seq.d/                        406   e-112
VSC703 (VSC703Q) /CSM/VS/VSC7-A/VSC703Q.Seq.d/                        398   e-110
VSB123 (VSB123Q) /CSM/VS/VSB1-A/VSB123Q.Seq.d/                        398   e-110
VSA476 (VSA476Q) /CSM/VS/VSA4-D/VSA476Q.Seq.d/                        398   e-110
VSK315 (VSK315Q) /CSM/VS/VSK3-A/VSK315Q.Seq.d/                        392   e-108
SSA817 (SSA817Q) /CSM/SS/SSA8-A/SSA817Q.Seq.d/                        367   e-100
AFK846 (AFK846Q) /CSM/AF/AFK8-B/AFK846Q.Seq.d/                         80   3e-14
AHR105 (AHR105Q) /CSM/AH/AHR1-A/AHR105Q.Seq.d/                         36   0.43
AHN312 (AHN312Q) /CSM/AH/AHN3-A/AHN312Q.Seq.d/                         36   0.43
AHE175 (AHE175Q) /CSM/AH/AHE1-D/AHE175Q.Seq.d/                         36   0.43
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BD233926|BD233926.1 Method and reagent of enhancing growth capability and preventing replicative senescence.    46  0.36  1
AX767357|AX767357.1 Sequence 5 from Patent WO03044226.            46  0.36  1
AX598730|AX598730.1 Sequence 70 from Patent WO02077272.           46  0.36  1
AX598678|AX598678.1 Sequence 18 from Patent WO02077272.           46  0.36  1
AX330534|AX330534.1 Sequence 1043 from Patent WO0194629.          46  0.36  1
AR167391|AR167391.1 Sequence 27 from patent US 6287569.           46  0.36  1
U37022|U37022.1 Human cyclin-dependent kinase 4 (CDK4) gene, complete cds.    46  0.36  1
AC007941|AC007941.3 Homo sapiens chromosome 18 clone RP11-356L1 map 18, WORKING DRAFT SEQUENCE, 17 unordered pieces.    44  1.4  1
BF750425|BF750425.1 RC1-BN0410-261000-024-g10 BN0410 Homo sapiens cDNA, mRNA sequence.    44  1.4  1
AC015566|AC015566.5 Homo sapiens chromosome 18 clone RP11-356P1 map 18, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44  1.4  1
dna update 2003. 8.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM992688_1186(FM992688|pid:none) Candida dubliniensis CD36 chrom...    32   9.3
protein update 2009. 3.20
PSORT 

 psg: 0.65  gvh: 0.58  alm: 0.12  top: 0.73  tms: 0.07  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.60  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VSC232 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSC232E
Full length Seq. 
>VSC232E.Seq
CAAAAAAAAAAAAAAAGAACTGTATATTTTCAATCGATAAACTTTTTTTTTTTTTTCAAA
GATTCAATAAATAGTGTTATAGTTTTGTAACAAAACCTTAAAAAAAAAGGAAACATTTAC
AAATATATATATATAGATTTAAAGNTGAATAGCAAACAAATTCTTTCATTAAGTGCATTC
GCCATGACAATTGCCACAGCTGCTGCTGGTAACTGGAATGCTGGTGACACAATTGCCTTA
TTAATTGGTATTGCCATGTTCTTTGTTCTCCTTTTAGCTCTCTTAGGTTGGATCAGCAGA
AGACAATAAATTTAAACAACCGCAAATAACGAATTTTTATTNGAATAAAAGAAAAAGAAA
AAGAAAAACAATAAGAAAATAAAAAATAATAAAAAAAAATAATAAAAAAAAAAAAAAAAA
AAAAAAATGTCAAATTAGGAGTTA
Length of full length seq. 444