>VSC230 (VSC230Q) /CSM/VS/VSC2-B/VSC230Q.Seq.d/
XXXXXXXXXXAATATTATTAACATTTAATCAAATAAAAACATATTAATATTTTTAATAAC
ATTTAATAAAATTAAAAAGGGGAAANTAAAATTTTTGATAAAATAAAAAAAATGGGTGCC
AAGAGTTCNAAACCCAAAAACATAGTTCAAGGAAGTAACAGTAGTAATGGCAGAGGAGGN
TCACNTTTTACTTTTTAAGCATAGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTT
ATTATATCCATTTATATGATCAATAAAATCAATCATTTTAAAATGATTTTTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---yy*hlik*khinifnni**n*KGEXKIFDKIKKMGAKSSKPKNIVQGSNSSNGRGGS
XFTF*a*lkkkkkkkkknviisiyminkinhfkmif*kkkkkkkkkkkkkkkkkkkk

Frame A:
---illtfnqikty*yf**hliklkrgx*nf**nkkngcqefxtqkhssrk*q**wqrrx
tfyflsivekkkkkkkkkcyyihlydq*nqsf*ndflkkkkkkkkkkkkkkkkkkkk


Frame B:
---yy*hlik*khinifnni**n*KGEXKIFDKIKKMGAKSSKPKNIVQGSNSSNGRGGS
XFTF*a*lkkkkkkkkknviisiyminkinhfkmif*kkkkkkkkkkkkkkkkkkkk


Frame C:
---iini*snkniliflitfnkikkgkxkflik*kkwvprvxnpkt*fkevtvvmaeexh
xllfkhs*kkkkkkkkkmllypfi*siksiilk*ffkkkkkkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC230 (VSC230Q) /CSM/VS/VSC2-B/VSC230Q.Seq.d/                        170   9e-42
VSC122 (VSC122Q) /CSM/VS/VSC1-A/VSC122Q.Seq.d/                        125   5e-28
CHK293 (CHK293Q) /CSM/CH/CHK2-D/CHK293Q.Seq.d/                         38   0.086
CHH637 (CHH637Q) /CSM/CH/CHH6-B/CHH637Q.Seq.d/                         38   0.086
CHG676 (CHG676Q) /CSM/CH/CHG6-D/CHG676Q.Seq.d/                         38   0.086
VHN189 (VHN189Q) /CSM/VH/VHN1-D/VHN189Q.Seq.d/                         34   1.3
VHI566 (VHI566Q) /CSM/VH/VHI5-C/VHI566Q.Seq.d/                         34   1.3
VFM426 (VFM426Q) /CSM/VF/VFM4-B/VFM426Q.Seq.d/                         34   1.3
SSJ472 (SSJ472Q) /CSM/SS/SSJ4-C/SSJ472Q.Seq.d/                         34   1.3
SSD159 (SSD159Q) /CSM/SS/SSD1-C/SSD159Q.Seq.d/                         34   1.3

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC007356|AC007356.8 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone BACR24H09, complete sequence.    38  0.22  3
AC130080|AC130080.2 Rattus norvegicus clone CH230-146K12, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  1.1  1
AL583844|AL583844.11 Human DNA sequence from clone RP11-365D9 on chromosome 1.    44  1.1  1
AC128186|AC128186.3 Rattus norvegicus clone CH230-382E14, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  1.1  1
AC094011|AC094011.2 Gallus gallus clone 50C6, complete sequence.    44  1.1  1
AC126779|AC126779.10 Medicago truncatula clone mth2-34m14, WORKING DRAFT SEQUENCE, 2 ordered pieces.    44  1.1  1
AL929530|AL929530.9 Zebrafish DNA sequence from clone CH211-190H2.    44  1.8  3
AL590406|AL590406.6 Human DNA sequence from clone RP11-418P12 on chromosome 6.    36  2.0  3
AP003768|AP003768.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07.    36  2.3  3
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    38  3.4  4

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 275,999,753

 psg: 0.56  gvh: 0.25  alm: 0.69  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 16.0 %: cytoskeletal
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VSC230 is nuc

>VSC230Z.Seq
----------AATATTATTAACATTTAATCAAATAAAAACATATTAATATTTTTAATAAC
ATTTAATAAAATTAAAAAGGGGAAANTAAAATTTTTGATAAAATAAAAAAAATGGGTGCC
AAGAGTTCNAAACCCAAAAACATAGTTCAAGGAAGTAACAGTAGTAATGGCAGAGGAGGN
TCACNTTTTACTTTTTAAGCATAGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTT
ATTATATCCATTTATATGATCAATAAAATCAATCATTTTAAAATGATTTTTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA