>VSC227 (VSC227Q) /CSM/VS/VSC2-B/VSC227Q.Seq.d/
XXXXXXXXXXGAAAGGGAAGCATTCACTATCCATGGTTTATGGCCAGAGAATAGTGATGG
CAGTTATCCATCATTCTGTTCAGGTCCATCATTCAATGTTAATGCTATCCAAGATTTAGA
AGATCAATTAAACTTTGATTGGCCATCACTCACTGGTCCAAACACTGATTTCTGGACTCA
CGAATTCAGCAAACATGGTACTTGTTCAATCACAGGTCCAATCACAGATATTCACGATTA
TTTCGCTACTGGTATCAAACTTTACACCGAATTCAATATCACTGCTGCCCTCGAATCTGA
AAATATTTATCCATCAGATAGCAACACTTACAAACCAGTCGATATCACTAATGCTATCAC
CACTCATTTTGGTGGTAAACCAGGTATTCAATGTTCATCTGGTCAATTATCAACTGTTGC
TGTTTGTATCGATAAAAATAGTTTATCAATCATGGATTGTCCAGATCTCCAAGGTTGGAG
TTGTTCTGGTAGTGTTAAATTCCCAAGCACTGCTTAAAAATATTTAACAAAAACTATCAT
ATAAAAAA

---REAFTIHGLWPENSDGSYPSFCSGPSFNVNAIQDLEDQLNFDWPSLTGPNTDFWTHE
FSKHGTCSITGPITDIHDYFATGIKLYTEFNITAALESENIYPSDSNTYKPVDITNAITT
HFGGKPGIQCSSGQLSTVAVCIDKNSLSIMDCPDLQGWSCSGSVKFPSTA*kyltktii*
k

Frame A:
---kgkhslsmvygqrivmavihhsvqvhhsmlmlski*kin*tlighhslvqtlisglt
nsanmvlvqsqvqsqiftiisllvsnftpnsisllpsnlkifihqiatltnqsislmlsp
lilvvnqvfnvhlvnyqlllfvsikivyqswivqiskvgvvlvvlnsqallkni*qklsy
kk


Frame B:
---kgsihypwfmare**wqlsiilfrsiiqc*cyprfrrsikl*laithwskh*fldsr
iqqtwylfnhrsnhrysrlfrywyqtlhriqyhccpri*kylsir*qhlqtsryh*cyhh
sfww*trysmfiwsiinccclyr*k*finhglsrsprlelfw*c*ipkhclkifnknyhi
k


Frame C:
---REAFTIHGLWPENSDGSYPSFCSGPSFNVNAIQDLEDQLNFDWPSLTGPNTDFWTHE
FSKHGTCSITGPITDIHDYFATGIKLYTEFNITAALESENIYPSDSNTYKPVDITNAITT
HFGGKPGIQCSSGQLSTVAVCIDKNSLSIMDCPDLQGWSCSGSVKFPSTA*kyltktii*
k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC227 (VSC227Q) /CSM/VS/VSC2-B/VSC227Q.Seq.d/                       1066   0.0
SSI141 (SSI141Q) /CSM/SS/SSI1-B/SSI141Q.Seq.d/                       1059   0.0
VSA582 (VSA582Q) /CSM/VS/VSA5-D/VSA582Q.Seq.d/                       1043   0.0
SSA623 (SSA623Q) /CSM/SS/SSA6-A/SSA623Q.Seq.d/                       1041   0.0
SSK670 (SSK670Q) /CSM/SS/SSK6-C/SSK670Q.Seq.d/                       1019   0.0
VHB567 (VHB567Q) /CSM/VH/VHB5-C/VHB567Q.Seq.d/                        955   0.0
VFH722 (VFH722Q) /CSM/VF/VFH7-A/VFH722Q.Seq.d/                        876   0.0
VFI169 (VFI169Q) /CSM/VF/VFI1-C/VFI169Q.Seq.d/                        860   0.0
VFL529 (VFL529Q) /CSM/VF/VFL5-B/VFL529Q.Seq.d/                        848   0.0
SSF854 (SSF854Q) /CSM/SS/SSF8-C/SSF854Q.Seq.d/                        835   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    46  0.006  4
AC145983|AC145983.1 Pan troglodytes chromosome UNK clone RP43-17E6, WORKING DRAFT SEQUENCE, 2 unordered pieces.    46  0.45  1
AC079806|AC079806.3 Homo sapiens chromosome 7 clone RP11-760E16, WORKING DRAFT SEQUENCE, 5 unordered pieces.    46  0.45  1
AC079405|AC079405.4 Homo sapiens BAC clone RP11-1150H5 from 7, complete sequence.    46  0.45  1
AC087469|AC087469.1 Homo sapiens chromosome 15 clone RP11-265G2 map 15, LOW-PASS SEQUENCE SAMPLING.    46  0.45  1
AX345881|AX345881.1 Sequence 952 from Patent WO0200928.           40  0.78  2
AC120813|AC120813.4 Rattus norvegicus clone CH230-66G5, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  1.8  1
AC140399|AC140399.1 Mus musculus chromosome UNK clone RP24-89F16, WORKING DRAFT SEQUENCE, 9 unordered pieces.    44  1.8  1
AC142167|AC142167.2 Mus musculus chromosome UNK clone RP24-117F4, WORKING DRAFT SEQUENCE, 11 unordered pieces.    44  1.8  1
AC139709|AC139709.8 Medicago truncatula clone mth2-22d18, WORKING DRAFT SEQUENCE, 9 unordered pieces.    44  1.8  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

JE0316(JE0316;JE0407)protozoan RNase,DdI - slime mold (Dictyoste...   360   1e-98
(Q7M438) RecName: Full=Ribonuclease DdI;          Short=RNase Dd...   360   1e-98
(P80022) RecName: Full=Extracellular ribonuclease LE;          S...   124   1e-27
S66342(S66342) ribonuclease II (EC 3.1.-.-) precursor, wound-ind...   123   3e-27
U13256_1(U13256|pid:none) Nicotiana alata RNase NE mRNA, complet...   121   1e-26
AB211503_1(AB211503|pid:none) Drosera adelae RNase DA-I mRNA for...   120   2e-26
AB034248_1(AB034248|pid:none) Volvox carteri vrn1 mRNA for S-lik...   120   2e-26
JC5518(JC5518)ribonuclease M5 (EC 3.1.-.-) precursor, wound-indu...   119   5e-26
AB112028_1(AB112028|pid:none) Nicotiana glutinosa ngr1 gene for ...   119   5e-26
AB034638_1(AB034638|pid:none) Nicotiana tabacum mRNA for RNase, ...   119   7e-26

 psg: 0.88  gvh: 0.47  alm: 0.46  top: 0.33  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum

>> prediction for VSC227 is cyt

>VSC227Z.Seq
----------GAAAGGGAAGCATTCACTATCCATGGTTTATGGCCAGAGAATAGTGATGG
CAGTTATCCATCATTCTGTTCAGGTCCATCATTCAATGTTAATGCTATCCAAGATTTAGA
AGATCAATTAAACTTTGATTGGCCATCACTCACTGGTCCAAACACTGATTTCTGGACTCA
CGAATTCAGCAAACATGGTACTTGTTCAATCACAGGTCCAATCACAGATATTCACGATTA
TTTCGCTACTGGTATCAAACTTTACACCGAATTCAATATCACTGCTGCCCTCGAATCTGA
AAATATTTATCCATCAGATAGCAACACTTACAAACCAGTCGATATCACTAATGCTATCAC
CACTCATTTTGGTGGTAAACCAGGTATTCAATGTTCATCTGGTCAATTATCAACTGTTGC
TGTTTGTATCGATAAAAATAGTTTATCAATCATGGATTGTCCAGATCTCCAAGGTTGGAG
TTGTTCTGGTAGTGTTAAATTCCCAAGCACTGCTTAAAAATATTTAACAAAAACTATCAT
ATAAAAAA