>VSC225 (VSC225Q) /CSM/VS/VSC2-B/VSC225Q.Seq.d/
XXXXXXXXXXCAATGGAAAGAAAAAAGGTTTCACCAATAGATTCTTATCAACTAGTGAAA
CCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGTGAATCATCGATGGAAGTTACAAGTG
GTTATGAATATGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGAGTCAAACTTTAA
ATGAAGGTTCTTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATATAATCTATGGTG
GTAGTTATAAACCATACATTGATCAAATGAATAAATTTAATCCTGGATTAAATATCAAAT
TCTTTAGGGAAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGATGCCTTCACTC
TTCGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGATTACTTGG
GTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTACCATGAAAATAATAATAATAATAAT
AATAATAATTATATAAATTACATAAAGGTTTCACTATTGGTGTTTTAATCCTGGTATAAA
TAAAATTCTAAAAATAAAAAATAAAAAACTATATAAAAATTAAAAAAAAAAAAAAAAAA

---NGKKKGFTNRFLSTSETKASVSVGFFGCESSMEVTSGYEYEDTVTSEETRSWSQTLN
EGSYIVYQNVLVYAYIIYGGSYKPYIDQMNKFNPGLNIKFFREDKCIFFVPINRDDAFTL
RYQDNTWDPVEYDVLIDYLGQNQDKWFSGGLP*k********lyklhkgftigvlilv*i
kf*k*kiknyikikkkkkk

Frame A:
---NGKKKGFTNRFLSTSETKASVSVGFFGCESSMEVTSGYEYEDTVTSEETRSWSQTLN
EGSYIVYQNVLVYAYIIYGGSYKPYIDQMNKFNPGLNIKFFREDKCIFFVPINRDDAFTL
RYQDNTWDPVEYDVLIDYLGQNQDKWFSGGLP*k********lyklhkgftigvlilv*i
kf*k*kiknyikikkkkkk


Frame B:
---merkkvspidsyqlvkpkhqfqsdslvvnhrwklqvvmnmktllhlkklevgvkl*m
kvlilfiktf*fmli*smvvvinhtlik*inlild*isnslgkinvsflyqlivmmpslf
vikiihgiqlnmmf*litwvkikingflvvyhennnnnnnnnyinyikvsllvf*swyk*
nsknkk*kti*klkkkkk


Frame C:
---wkekrfhq*ilin**nqsisfsrilwl*iidgsykwl*i*rhcyi*rn*klesnfk*
rflyclskrfslclynlww*l*tih*sne*i*swikyqil*gr*mylfctn*s**clhss
lsr*ymgss*i*cfn*llgsksr*mvfwwftmkiiiiiiiiii*it*rfhywcfnpgink
ilkiknkklykn*kkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC225 (VSC225Q) /CSM/VS/VSC2-B/VSC225Q.Seq.d/                        896   0.0
VSK377 (VSK377Q) /CSM/VS/VSK3-D/VSK377Q.Seq.d/                        876   0.0
VSJ788 (VSJ788Q) /CSM/VS/VSJ7-D/VSJ788Q.Seq.d/                        876   0.0
VSJ730 (VSJ730Q) /CSM/VS/VSJ7-B/VSJ730Q.Seq.d/                        876   0.0
VSI304 (VSI304Q) /CSM/VS/VSI3-A/VSI304Q.Seq.d/                        876   0.0
VSI168 (VSI168Q) /CSM/VS/VSI1-C/VSI168Q.Seq.d/                        876   0.0
VSF255 (VSF255Q) /CSM/VS/VSF2-C/VSF255Q.Seq.d/                        876   0.0
VSE526 (VSE526Q) /CSM/VS/VSE5-B/VSE526Q.Seq.d/                        876   0.0
VSD543 (VSD543Q) /CSM/VS/VSD5-B/VSD543Q.Seq.d/                        876   0.0
VSC792 (VSC792Q) /CSM/VS/VSC7-D/VSC792Q.Seq.d/                        876   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U48706|U48706.1 Dictyostelium discoideum small aggregate formation (smlA) gene, complete cds.   876  0.0  2
X94341|X94341.1 D.discoideum mRNA for unknown protein with homology to spore germination protein.    86  5e-28  3
CA930567|CA930567.1 MTU4CA.P24.B01 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.29  2
CA930485|CA930485.1 MTU4CA.P23.B04 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.29  2
CA930468|CA930468.1 MTU4CA.P22.H11 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.30  2
CA930577|CA930577.1 MTU4CA.P24.B11 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.30  2
AC123872|AC123872.4 Mus musculus chromosome 2 clone RP23-254P8, complete sequence.    46  0.50  1
AL831771|AL831771.4 Mouse DNA sequence from clone RP23-336F13 on chromosome X.    46  0.50  1
AC138612|AC138612.1 Homo sapiens BAC clone CTD-2293E22 from 2, complete sequence.    36  0.75  4
AC024564|AC024564.4 Homo sapiens chromosome 5 clone CTC-532M5, complete sequence.    36  0.99  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_42(AC116330|pid:none) Dictyostelium discoideum chromoso...    43   0.006
AC116330_41(AC116330|pid:none) Dictyostelium discoideum chromoso...    42   0.013
CP000712_1048(CP000712|pid:none) Pseudomonas putida F1, complete...    41   0.029
AE001362_167(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.55
AY332625_22(AY332625|pid:none) Campylobacter jejuni serotype HS:...    35   1.2
DQ790236_1(DQ790236|pid:none) Champereia manillana acetyl co-A c...    35   1.6
BX545858_22(BX545858|pid:none) Campylobacter jejuni.                   35   2.1
AY934867_3(AY934867|pid:none) Campylobacter jejuni subsp. jejuni...    35   2.1
CP000932_787(CP000932|pid:none) Campylobacter lari RM2100, compl...    35   2.1
DQ790237_1(DQ790237|pid:none) Agonandra macrocarpa acetyl co-A c...    34   2.7

 psg: 0.68  gvh: 0.44  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 32.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for VSC225 is mit

>VSC225Z.Seq
----------CAATGGAAAGAAAAAAGGTTTCACCAATAGATTCTTATCAACTAGTGAAA
CCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGTGAATCATCGATGGAAGTTACAAGTG
GTTATGAATATGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGAGTCAAACTTTAA
ATGAAGGTTCTTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATATAATCTATGGTG
GTAGTTATAAACCATACATTGATCAAATGAATAAATTTAATCCTGGATTAAATATCAAAT
TCTTTAGGGAAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGATGCCTTCACTC
TTCGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGATTACTTGG
GTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTACCATGAAAATAATAATAATAATAAT
AATAATAATTATATAAATTACATAAAGGTTTCACTATTGGTGTTTTAATCCTGGTATAAA
TAAAATTCTAAAAATAAAAAATAAAAAACTATATAAAAATTAAAAAAAAAAAAAAAAAA