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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSC220
Library VS
(Link to library)
Clone ID VSC220
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15185-1
Original site URL
Representative seq. ID VSC220Z
(Link to Original site)
Representative DNA sequence 
>VSC220 (VSC220Q) /CSM/VS/VSC2-A/VSC220Q.Seq.d/
XXXXXXXXXXGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGT
TAAAAAGTTGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATCC
CGTCAGACGTTCATCCGTTGGTATATGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGG
TGGTGCTTGGACTATGTCAAATGCCGCTGGTGCCACTGTTNGATCAACTATCAGACGTTT
CAGAGAGTTAAATAANTAAACCATTTATATATGAAATAAAATAAATCAGGACCAATATAC
ACTGGTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 2000. 9.22
Translated Amino Acid sequence 
---VGKYGTRYGASLRKQVKKLEITQHGTYTCSFCGKDPVRRSSVGIWKCNGCRKVLAGG
AWTMSNAAGATVXSTIRRFRELNX*tiyi*nkinqdqytlvlknkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---lsvntvpdmvll*esklkswkspntvptpvhsvvkipsdvhplvygnvtvavkf*lv
vlglcqmplvplxdqlsdvses*ixkpfiyeik*irtnihwf*kikkkkkkkkkk


Frame B:
---cr*iryqiwcffkkas*kvgnhptrylhlfilw*rsrqtfirwymem*rlp*sfsww
cldyvkcrwchcxinyqtfqrvk*xnhlymk*nksgpiytgfkk*kkkkkkkkkk


Frame C:
---VGKYGTRYGASLRKQVKKLEITQHGTYTCSFCGKDPVRRSSVGIWKCNGCRKVLAGG
AWTMSNAAGATVXSTIRRFRELNX*tiyi*nkinqdqytlvlknkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC220 (VSC220Q) /CSM/VS/VSC2-A/VSC220Q.Seq.d/                        581   e-165
VSA733 (VSA733Q) /CSM/VS/VSA7-B/VSA733Q.Seq.d/                        549   e-156
VSK445 (VSK445Q) /CSM/VS/VSK4-B/VSK445Q.Seq.d/                        541   e-153
VSK444 (VSK444Q) /CSM/VS/VSK4-B/VSK444Q.Seq.d/                        541   e-153
VSK161 (VSK161Q) /CSM/VS/VSK1-C/VSK161Q.Seq.d/                        541   e-153
VSK116 (VSK116Q) /CSM/VS/VSK1-A/VSK116Q.Seq.d/                        541   e-153
VSI473 (VSI473Q) /CSM/VS/VSI4-D/VSI473Q.Seq.d/                        541   e-153
VSI440 (VSI440Q) /CSM/VS/VSI4-B/VSI440Q.Seq.d/                        541   e-153
VSI243 (VSI243Q) /CSM/VS/VSI2-B/VSI243Q.Seq.d/                        541   e-153
VSH888 (VSH888Q) /CSM/VS/VSH8-D/VSH888Q.Seq.d/                        541   e-153
own update 2004. 8. 5
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL114982|AL114982.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    70  2e-08  1
AL116011|AL116011.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    70  2e-08  1
AL116009|AL116009.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    70  2e-08  1
AL115603|AL115603.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    70  2e-08  1
AL112083|AL112083.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    70  2e-08  1
AL112069|AL112069.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    70  2e-08  1
AL110769|AL110769.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    70  2e-08  1
AL111042|AL111042.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    70  2e-08  1
CB090076|CB090076.1 gp34c12.g1 Cycad Leaf Library (NYBG) Cycas rumphii cDNA clone gp34c12, mRNA sequence.    66  3e-07  1
CB093165|CB093165.1 te81b12.b7 Cycad Leaf Library (NYBG) Cycas rumphii cDNA clone te81b12, mRNA sequence.    66  3e-07  1
dna update 2003. 8.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UG4) RecName: Full=60S ribosomal protein L37a;  &JE0321(JE03...   160   1e-38
A63921_1(A63921|pid:none) Sequence 46 from Patent WO9723633.  &C...   124   8e-28
EU125030_1(EU125030|pid:none) Eurythoe complanata ribosomal prot...   124   1e-27
EZ000381_1(EZ000381|pid:none) TSA: Culex tarsalis Ctar-19 60S ri...   123   2e-27
(O61462) RecName: Full=60S ribosomal protein L37a;  &AF040712_1(...   123   2e-27
AF363029_1(AF363029|pid:none) Branchiostoma belcheri 60S ribosom...   122   3e-27
EU116912_1(EU116912|pid:none) Barentsia elongata putative riboso...   121   7e-27
AY349162_1(AY349162|pid:none) Toxoplasma gondii N1 mRNA, complet...   120   1e-26
AM049131_1(AM049131|pid:none) Cicindela littoralis mRNA for ribo...   120   1e-26
(O61598) RecName: Full=60S ribosomal protein L37a;  &AF052737_1(...   120   1e-26
protein update 2009. 7.28
PSORT 

 psg: 0.55  gvh: 0.37  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 32.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system

>> prediction for VSC220 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSC220Z
3' end seq. 
>VSC220Z.Seq
----------GTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGT
TAAAAAGTTGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATCC
CGTCAGACGTTCATCCGTTGGTATATGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGG
TGGTGCTTGGACTATGTCAAATGCCGCTGGTGCCACTGTTNGATCAACTATCAGACGTTT
CAGAGAGTTAAATAANTAAACCATTTATATATGAAATAAAATAAATCAGGACCAATATAC
ACTGGTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 338
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -