VSC214
Library VS
(Link to library)
Clone ID VSC214
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16046-1
Original site URL
Representative seq. ID VSC214Z
(Link to Original site)
Representative DNA sequence
>VSC214 (VSC214Q) /CSM/VS/VSC2-A/VSC214Q.Seq.d/
XXXXXXXXXXTCAAATTATACATTACCAACATTTGAATGTATTATTCCTCCTTCCAGTTA
TTTAGGTTATAATTGCACAGATGCATCAGGNATTGAAATTAATTACTCAATCATTATGNA
TATGTTAAATGATACAGCAATACCAAATGGTGGTGTTCAATGGGATTCAGAATCAGAGTC
ACCATATTTTAATTTTATTGACTTATTTTNTGGTACTCAACACCAAATGTGGTTTGATAA
TCCAGACTCATTAACCATTAAAGTCAATATAGCACGTACAATGAACCTTAGAGGTGTTGG
TGTATGGAATATTGATCAACTTTGGGATGACCATTNTCTTTCATCTGGAATTTGGGGTGC
ATTAAATTTTTTTTTTAAAATTAATTAGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATTAATAAATAAAGTAATAAATAAATAAATAAATTAATAAATAAATAAATT
AATAAAAAAAAA
sequence update 2000.10.12
Translated Amino Acid sequence
---NYTLPTFECIIPPSSYLGYNCTDASGIEINYSIIMXMLNDTAIPNGGVQWDSESESP
YFNFIDLFXGTQHQMWFDNPDSLTIKVNIARTMNLRGVGVWNIDQLWDDHXLSSGIWGAL
NFFFKIN*l*kkkkkkkkkkkklinkvink*in**inklikk


Translated Amino Acid sequence (All Frames)
Frame A:
---qiihyqhlnvlfllpvi*viiaqmhqxlklitqslxic*miqqyqmvvfngiqnqsh
hililltyfxvlntkcgliiqth*plksi*hvq*tlevlvygilinfgmtixfhlefgvh
*ifflklisykkkkkkkkkkkkn**ik**ink*ink*in**kk


Frame B:
---klyitni*myyssfqlfrl*lhrcirx*n*llnhyxyvk*ysntkwwcsmgfrirvt
if*fy*lixwystpnvv**srlinh*sqystynep*rcwcmey*stlg*pxsfiwnlgci
kfff*n*lvikkkkkkkkkkkkink*snk*inklink*inkkk


Frame C:
---NYTLPTFECIIPPSSYLGYNCTDASGIEINYSIIMXMLNDTAIPNGGVQWDSESESP
YFNFIDLFXGTQHQMWFDNPDSLTIKVNIARTMNLRGVGVWNIDQLWDDHXLSSGIWGAL
NFFFKIN*l*kkkkkkkkkkkklinkvink*in**inklikk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSC214 (VSC214Q) /CSM/VS/VSC2-A/VSC214Q.Seq.d/ 682 0.0
VFK726 (VFK726Q) /CSM/VF/VFK7-B/VFK726Q.Seq.d/ 613 e-174
VFE783 (VFE783Q) /CSM/VF/VFE7-D/VFE783Q.Seq.d/ 559 e-158
VFK645 (VFK645Q) /CSM/VF/VFK6-B/VFK645Q.Seq.d/ 527 e-149
VFI247 (VFI247Q) /CSM/VF/VFI2-B/VFI247Q.Seq.d/ 474 e-133
VSK411 (VSK411Q) /CSM/VS/VSK4-A/VSK411Q.Seq.d/ 462 e-129
VFC222 (VFC222Q) /CSM/VF/VFC2-A/VFC222Q.Seq.d/ 458 e-128
VSB130 (VSB130Q) /CSM/VS/VSB1-B/VSB130Q.Seq.d/ 224 1e-57
VSB169 (VSB169Q) /CSM/VS/VSB1-C/VSB169Q.Seq.d/ 38 0.12
VHE448 (VHE448Q) /CSM/VH/VHE4-B/VHE448Q.Seq.d/ 38 0.12

own update 2004. 8. 5
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence. 658 0.0 2
BP120238|BP120238.1 Bombyx mori cDNA, clone:ceN-2006. 46 0.41 1
AC098687|AC098687.2 Bos taurus clone rp42-194o5, complete sequence. 42 1.4 3
CC240744|CC240744.1 CH261-45E19_Sp6.2 CH261 Gallus gallus genomic clone CH261-45E19, DNA sequence. 44 1.6 1
CC223108|CC223108.1 CH261-152J6_Sp6.2 CH261 Gallus gallus genomic clone CH261-152J6, DNA sequence. 44 1.6 1
AL590006|AL590006.4 Human DNA sequence from clone RP11-103C16 on chromosome 6. 42 3.2 2
AL590723|AL590723.13 Human DNA sequence from clone RP11-492I21 on chromosome 1. 40 5.8 3
AC123738|AC123738.3 Mus musculus clone RP24-67N17, WORKING DRAFT SEQUENCE, 3 unordered pieces. 42 6.3 1
AC118376|AC118376.3 Rattus norvegicus clone CH230-71O15, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces. 42 6.3 1
AP001034|AP001034.5 Homo sapiens genomic DNA, chromosome 11q clone:RP11-729B4. 42 6.3 1
dna update 2003. 8.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC022594_1(BC022594|pid:none) Mus musculus chitobiase, di-N-acet... 81 1e-14
(Q8R242) RecName: Full=Di-N-acetylchitobiase; EC=3.2.1.... 81 1e-14
BC164759_1(BC164759|pid:none) Danio rerio chitobiase, di-N-acety... 79 4e-14
BC095064_1(BC095064|pid:none) Danio rerio chitobiase, di-N-acety... 79 4e-14
AB168353_1(AB168353|pid:none) Macaca fascicularis testis cDNA cl... 79 6e-14
AC115592_28(AC115592|pid:none) Dictyostelium discoideum chromoso... 79 8e-14
BC072723_1(BC072723|pid:none) Danio rerio chitobiase, di-N-acety... 78 1e-13
AK314640_1(AK314640|pid:none) Homo sapiens cDNA, FLJ95483, highl... 75 1e-12
AY260731_1(AY260731|pid:none) Xenopus laevis putative di-N-acety... 72 7e-12
BC088895_1(BC088895|pid:none) Xenopus tropicalis hypothetical LO... 69 5e-11
protein update 2009. 7.28
PSORT

psg: 0.75 gvh: 0.42 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for VSC214 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSC214Z
3' end seq.
>VSC214Z.Seq
----------TCAAATTATACATTACCAACATTTGAATGTATTATTCCTCCTTCCAGTTA
TTTAGGTTATAATTGCACAGATGCATCAGGNATTGAAATTAATTACTCAATCATTATGNA
TATGTTAAATGATACAGCAATACCAAATGGTGGTGTTCAATGGGATTCAGAATCAGAGTC
ACCATATTTTAATTTTATTGACTTATTTTNTGGTACTCAACACCAAATGTGGTTTGATAA
TCCAGACTCATTAACCATTAAAGTCAATATAGCACGTACAATGAACCTTAGAGGTGTTGG
TGTATGGAATATTGATCAACTTTGGGATGACCATTNTCTTTCATCTGGAATTTGGGGTGC
ATTAAATTTTTTTTTTAAAATTAATTAGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATTAATAAATAAAGTAATAAATAAATAAATAAATTAATAAATAAATAAATT
AATAAAAAAAAA
Length of 3' end seq. 482
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -