>VSC209 (VSC209Q) /CSM/VS/VSC2-A/VSC209Q.Seq.d/
XXXXXXXXXXAATCGATATTAAAGATTCGATTCTAACCATTCAAGGTGAAAAGGAAATCA
ATAATAATTACAAACAACAACAACAACAACAATCAGATAAAACCAAAACAAACAATGAGC
TACCTTTAATAGAAGAGAATAAAAAAGAATTTAGGAAATATTTATCAGAGAGATCATTTG
GTAATTTTAAAAGATGTTTGGATTTAACTAGTATTTTATATCAATTAGATTTATCAACTA
TTAAATCAAATTTTGAAAATGGTCTATTAATAATCACAATCAATAAGAAATCTGATTTAT
CAAATTCTTCTTTTAAAATAAATATTAATTAATACCCATAATTTTAAATAATTATAAAAA
TAATATTAAAAAAAACTTGTAAATAATACAAAAAAAATTTTATTTAAATAATAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---IDIKDSILTIQGEKEINNNYKQQQQQQSDKTKTNNELPLIEENKKEFRKYLSERSFG
NFKRCLDLTSILYQLDLSTIKSNFENGLLIITINKKSDLSNSSFKININ*yp*f*iiiki
ilkktck*ykknfi*iikkkkkkkkkkkkkkkkkk

Frame A:
---IDIKDSILTIQGEKEINNNYKQQQQQQSDKTKTNNELPLIEENKKEFRKYLSERSFG
NFKRCLDLTSILYQLDLSTIKSNFENGLLIITINKKSDLSNSSFKININ*yp*f*iiiki
ilkktck*ykknfi*iikkkkkkkkkkkkkkkkkk


Frame B:
---silkirf*pfkvkrksiiitnnnnnnnqikpkqtmsyl**krikknlgniyqrdhlv
ilkdvwi*lvfyin*iyqllnqilkmvy**sqsirnliyqilllk*ilinthnfk*l*k*
y*kklvnntkkilfk**kkkkkkkkkkkkkkkkkk


Frame C:
---ry*rfdsnhsr*kgnq**lqttttttir*nqnkq*atfnrre*kri*eifireiiw*
f*kmfgfn*yfisirfiny*ikf*kwsinnhnq*ei*fikfff*nky*lipiilnnyknn
ikknl*iiqkkfylnnkkkkkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC209 (VSC209Q) /CSM/VS/VSC2-A/VSC209Q.Seq.d/                        470   e-132
VSD762 (VSD762Q) /CSM/VS/VSD7-C/VSD762Q.Seq.d/                        454   e-127
VSG329 (VSG329Q) /CSM/VS/VSG3-B/VSG329Q.Seq.d/                        448   e-125
VSK434 (VSK434Q) /CSM/VS/VSK4-B/VSK434Q.Seq.d/                        109   4e-23
VSI828 (VSI828Q) /CSM/VS/VSI8-B/VSI828Q.Seq.d/                         94   2e-18
VSK460 (VSK460Q) /CSM/VS/VSK4-C/VSK460Q.Seq.d/                         90   4e-17
VSC893 (VSC893Q) /CSM/VS/VSC8-D/VSC893Q.Seq.d/                         90   4e-17
VSA822 (VSA822Q) /CSM/VS/VSA8-A/VSA822Q.Seq.d/                         90   4e-17
SHK122 (SHK122Q) /CSM/SH/SHK1-A/SHK122Q.Seq.d/                         90   4e-17
VSJ631 (VSJ631Q) /CSM/VS/VSJ6-B/VSJ631Q.Seq.d/                         82   9e-15

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   454  e-146  2
AC116955|AC116955.2 Dictyostelium discoideum chromosome 2 map 5455881-5481449 strain AX4, complete sequence.    90  6e-28  4
AC116967|AC116967.2 Dictyostelium discoideum chromosome 2 map 5481549-5500786 strain AX4, complete sequence.    90  8e-28  5
AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    82  4e-27  6
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    82  8e-21  8
AC116550|AC116550.2 Dictyostelium discoideum chromosome 2 map 375056-387392 strain AX4, complete sequence.    52  1e-16  6
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    52  2e-05  7
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36  8e-04  12
BI617822|BI617822.1 RH48271.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH48271 5, mRNA sequence.    44  0.060  2
AL645973|AL645973.8 Mouse DNA sequence from clone RP23-287B6 on chromosome 11.    48  0.098  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86I25) RecName: Full=Small heat shock protein hspG1;  &AC11630...   194   8e-49
(Q86KF5) RecName: Full=Small heat shock protein hspG9;  &AC11696...    98   8e-20
(Q8MPA7) RecName: Full=Small heat shock protein hspG5;  &AC11695...    95   7e-19
AC116967_6(AC116967|pid:none) Dictyostelium discoideum chromosom...    95   9e-19
(Q550E9) RecName: Full=Small heat shock protein hspG8;                 90   2e-17
(Q551G1) RecName: Full=Small heat shock protein hspG4;                 87   2e-16
(Q552K9) RecName: Full=Small heat shock protein hspG2;                 86   3e-16
AC116967_4(AC116967|pid:none) Dictyostelium discoideum chromosom...    86   5e-16
AC116550_9(AC116550|pid:none) Dictyostelium discoideum chromosom...    76   3e-13
AM236080_1890(AM236080|pid:none) Rhizobium leguminosarum bv. vic...    45   6e-04

 psg: 0.75  gvh: 0.15  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VSC209 is nuc

>VSC209Z.Seq
----------AATCGATATTAAAGATTCGATTCTAACCATTCAAGGTGAAAAGGAAATCA
ATAATAATTACAAACAACAACAACAACAACAATCAGATAAAACCAAAACAAACAATGAGC
TACCTTTAATAGAAGAGAATAAAAAAGAATTTAGGAAATATTTATCAGAGAGATCATTTG
GTAATTTTAAAAGATGTTTGGATTTAACTAGTATTTTATATCAATTAGATTTATCAACTA
TTAAATCAAATTTTGAAAATGGTCTATTAATAATCACAATCAATAAGAAATCTGATTTAT
CAAATTCTTCTTTTAAAATAAATATTAATTAATACCCATAATTTTAAATAATTATAAAAA
TAATATTAAAAAAAACTTGTAAATAATACAAAAAAAATTTTATTTAAATAATAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA