VSC206
Library VS
(Link to library)
Clone ID VSC206
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16090-1
Original site URL
Representative seq. ID VSC206Z
(Link to Original site)
Representative DNA sequence
>VSC206 (VSC206Q) /CSM/VS/VSC2-A/VSC206Q.Seq.d/
XXXXXXXXXXTTTAAAGAACAAAAACGAAGTATGGAGAGTCCAATACGCTTTAGCCAAAA
TCAGAAAGGCTGCTAGAGAACTCCTCGCTCTTGATGAAAAAGACCCAAAACGTATCTTTG
AAGGTTCAGCTCTCNTCCGTAGACTCCACAAATTAGGTGTCATGGAAGAATCAAAGAACA
AACTCGATTATATTCTTAATCTTAAAGTTCAAGATTTCATGGAAAGACGTCTCCAAACTT
TAGTCTTCAAAAATGGTCTTGCCAAATCAATCCATCACGCTCGTGTTTTAATCAAAGGTA
GACACATCCGTGTTGGTAAACAATTAGTCAACGTTCCATCTTTCCTCGTCCGTGTTGAAT
CCCAAAAGCACTTAGGTTTAGCTTCAACCTCCCCATTAGCTGGTGGTCGTCCAGGTCGTC
GTGCCCGTAAAATGGCCAAGAACAACTCATCAAAAGGTGAAGAAGAAAACTAAATTAATA
AAAATAACCATTATATTAGAGAGTA
sequence update 2000. 9.22
Translated Amino Acid sequence
---LKNKNEVWRVQYALAKIRKAARELLALDEKDPKRIFEGSALXRRLHKLGVMEESKNK
LDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVES
QKHLGLASTSPLAGGRPGRRARKMAKNNSSKGEEEN*inknnhyire


Translated Amino Acid sequence (All Frames)
Frame A:
---LKNKNEVWRVQYALAKIRKAARELLALDEKDPKRIFEGSALXRRLHKLGVMEESKNK
LDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVES
QKHLGLASTSPLAGGRPGRRARKMAKNNSSKGEEEN*inknnhyire


Frame B:
---*rtktkygesntl*pkserllenssllmkktqnvslkvqlssvdstn*vswknqrtn
siiflilkfkiswkdvskl*sskmvlpnqsitlvf*skvdtsvlvnn*stfhlsssvlnp
kst*v*lqpph*lvvvqvvvpvkwprtthqkvkkktklikitiiles


Frame C:
---keqkrsmespirfsqnqkgc*rtprs**krpktyl*rfssxp*tpqirchgrikeqt
rlys*s*ssrfhgktspnfslqkwscqinpsrscfnqr*thpcw*tisqrsifprpc*ip
kalrfsfnlpiswwssrsscp*ngqeqlikr*rrkln**k*ply*rv


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSC206 (VSC206Q) /CSM/VS/VSC2-A/VSC206Q.Seq.d/ 975 0.0
VSK290 (VSK290Q) /CSM/VS/VSK2-D/VSK290Q.Seq.d/ 967 0.0
VHO354 (VHO354Q) /CSM/VH/VHO3-C/VHO354Q.Seq.d/ 967 0.0
FC-BO11 (FC-BO11Q) /CSM/FC/FC-BO/FC-BO11Q.Seq.d/ 967 0.0
FC-AS15 (FC-AS15Q) /CSM/FC/FC-AS/FC-AS15Q.Seq.d/ 967 0.0
VSH713 (VSH713Q) /CSM/VS/VSH7-A/VSH713Q.Seq.d/ 961 0.0
VHJ170 (VHJ170Q) /CSM/VH/VHJ1-C/VHJ170Q.Seq.d/ 955 0.0
VSF164 (VSF164Q) /CSM/VS/VSF1-C/VSF164Q.Seq.d/ 950 0.0
VSB144 (VSB144Q) /CSM/VS/VSB1-B/VSB144Q.Seq.d/ 946 0.0
VSI708 (VSI708Q) /CSM/VS/VSI7-A/VSI708Q.Seq.d/ 942 0.0

own update 2003. 1. 9
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X06636|X06636.1 Dictyostelium rp1024 gene for ribosomal protein 1024. 967 0.0 1
X15384|X15384.1 Dictyostelium discoideum mRNA for V12 gene. 773 0.0 1
AL113229|AL113229.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 4e-14 2
AL111854|AL111854.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 4e-14 2
AL111255|AL111255.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 5e-14 2
AL116832|AL116832.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 5e-14 2
AL116249|AL116249.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 5e-14 2
AL116178|AL116178.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 5e-14 2
AL115920|AL115920.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 5e-14 2
AL115016|AL115016.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 5e-14 2
dna update 2003. 8.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P14132) RecName: Full=40S ribosomal protein S9; AltName: Full=4... 249 2e-65
AY857466_1(AY857466|pid:none) Suberites domuncula S9 mRNA, compl... 194 1e-48
AP007167_255(AP007167|pid:none) Aspergillus oryzae RIB40 genomic... 194 1e-48
AM270039_25(AM270039|pid:none) Aspergillus niger contig An02c045... 192 3e-48
CU633445_35(CU633445|pid:none) Podospora anserina genomic DNA ch... 191 1e-47
AY392170_1(AY392170|pid:none) Scyliorhinus canicula ribosomal pr... 190 1e-47
BT043959_1(BT043959|pid:none) Salmo salar clone HM5_0638 ribosom... 190 2e-47
AM920435_274(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 190 2e-47
BT047496_1(BT047496|pid:none) Salmo salar clone ssal-rgb-509-120... 190 2e-47
BC073375_1(BC073375|pid:none) Xenopus laevis MGC80804 protein, m... 190 2e-47
protein update 2009. 7.28
PSORT

psg: 0.73 gvh: 0.31 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.04
nuc: 0.23 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

88.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: nuclear

>> prediction for VSC206 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSC206Z
3' end seq.
>VSC206Z.Seq
----------TTTAAAGAACAAAAACGAAGTATGGAGAGTCCAATACGCTTTAGCCAAAA
TCAGAAAGGCTGCTAGAGAACTCCTCGCTCTTGATGAAAAAGACCCAAAACGTATCTTTG
AAGGTTCAGCTCTCNTCCGTAGACTCCACAAATTAGGTGTCATGGAAGAATCAAAGAACA
AACTCGATTATATTCTTAATCTTAAAGTTCAAGATTTCATGGAAAGACGTCTCCAAACTT
TAGTCTTCAAAAATGGTCTTGCCAAATCAATCCATCACGCTCGTGTTTTAATCAAAGGTA
GACACATCCGTGTTGGTAAACAATTAGTCAACGTTCCATCTTTCCTCGTCCGTGTTGAAT
CCCAAAAGCACTTAGGTTTAGCTTCAACCTCCCCATTAGCTGGTGGTCGTCCAGGTCGTC
GTGCCCGTAAAATGGCCAAGAACAACTCATCAAAAGGTGAAGAAGAAAACTAAATTAATA
AAAATAACCATTATATTAGAGAGTA
Length of 3' end seq. 495
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -