>VSC173 (VSC173Q) /CSM/VS/VSC1-D/VSC173Q.Seq.d/
XXXXXXXXXXCCAAAGCCATGTCTGTAATGAACTCCTTTGTCCACGATATNTTTGACNGA
ATCGCCACCGAAGCTTCTGGTTTAGCCAAAAAGAAGAAGAGACAAACTTTACACTCAAGA
GATATTCAAGTTGCCGTTCGTATCATTCTCACTGGTGAGTTAGCTAAACATGCCATCTTA
CAAGGTATGACTGCTGTCAACAAGTACAATCCAACTGAAAGCAAAAACTAAATTGGTTCC
AAATGAACTATATTCCTTAAAAAAATATAGTTTCCAATTTTCTTTTTTTTTGTACTCTCT
NTATCATTCTTTTTTAAAAAAAAAAAAAATCA

---KAMSVMNSFVHDXFDXIATEASGLAKKKKRQTLHSRDIQVAVRIILTGELAKHAILQ
GMTAVNKYNPTESKN*igsk*tiflkki*fpiffffvlsxsfffkkkkn

Frame A:
---qshvcnellcpryx*xnrhrsfwfsqkeeetnftlkrysscrsyhshw*vs*tchlt
rydccqqvqsn*kqklnwfqmnyip*knivsnflffctlxiilf*kkkks


Frame B:
---KAMSVMNSFVHDXFDXIATEASGLAKKKKRQTLHSRDIQVAVRIILTGELAKHAILQ
GMTAVNKYNPTESKN*igsk*tiflkki*fpiffffvlsxsfffkkkkn


Frame C:
---kpcl**tplstixltesppkllv*pkrrrdklytqeifklpfvsfslvs*lnmpsyk
v*llststiqlkaktklvpnelyslkkysfqfsfflyslyhsflkkkki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE410 (VSE410Q) /CSM/VS/VSE4-A/VSE410Q.Seq.d/                        492   e-138
VSC173 (VSC173Q) /CSM/VS/VSC1-D/VSC173Q.Seq.d/                        492   e-138
VSC132 (VSC132Q) /CSM/VS/VSC1-B/VSC132Q.Seq.d/                        492   e-138
VSJ146 (VSJ146Q) /CSM/VS/VSJ1-B/VSJ146Q.Seq.d/                        486   e-136
VSH880 (VSH880Q) /CSM/VS/VSH8-D/VSH880Q.Seq.d/                        486   e-136
VSH334 (VSH334Q) /CSM/VS/VSH3-B/VSH334Q.Seq.d/                        486   e-136
VSH159 (VSH159Q) /CSM/VS/VSH1-C/VSH159Q.Seq.d/                        486   e-136
VSF406 (VSF406Q) /CSM/VS/VSF4-A/VSF406Q.Seq.d/                        486   e-136
VSE878 (VSE878Q) /CSM/VS/VSE8-D/VSE878Q.Seq.d/                        486   e-136
VSE742 (VSE742Q) /CSM/VS/VSE7-B/VSE742Q.Seq.d/                        486   e-136

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL418813|AL418813.1 T7 end of clone AX0AA034F12 of library AX0AA from strain CBS 7064 of Pichia farinosa.    52  0.004  1
BM111490|BM111490.1 EST559026 potato roots Solanum tuberosum cDNA clone cPRO11D7 5' end , mRNA sequence.    38  0.025  2
BG592519|BG592519.1 EST491197 cSTS Solanum tuberosum cDNA clone cSTS1H11 5' sequence, mRNA sequence.    38  0.030  2
BG599151|BG599151.1 EST504051 cSTS Solanum tuberosum cDNA clone cSTS23B13 5' sequence, mRNA sequence.    38  0.031  2
BI920756|BI920756.1 EST540679 potato microtubers, in vitro-grown Solanum tuberosum cDNA clone cSTE26I24 5' end, mRNA sequence.    38  0.031  2
AJ494852|AJ494852.1 Oikopleura dioica partial H2A.4 gene for histone H2A.4.    48  0.068  1
AI775835|AI775835.1 EST256935 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER16P21, mRNA sequence.    36  0.089  2
BI204754|BI204754.1 EST522794 cTOS Lycopersicon esculentum cDNA clone cTOS6A3 5' end, mRNA sequence.    36  0.097  2
AW623389|AW623389.1 EST321334 tomato flower buds 3-8 mm, Cornell University Lycopersicon esculentum cDNA clone cTOB10G7 5', mRNA sequence.    36  0.10  2
BI928103|BI928103.1 EST547992 tomato flower, 3 - 8 mm buds Lycopersicon esculentum cDNA clone cTOB24B17 5' end, mRNA sequence.    36  0.10  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM992690_367(FM992690|pid:none) Candida dubliniensis CD36 chromo...    84   1e-15
FB334644_1(FB334644|pid:none) Sequence 2170 from Patent WO200711...    84   2e-15
AC024696_6(AC024696|pid:none) Caenorhabditis elegans cosmid F07B...    84   2e-15
FB334560_1(FB334560|pid:none) Sequence 2086 from Patent WO200711...    84   2e-15
(P04255) RecName: Full=Histone H2B 1;  &AF047656_5(AF047656|pid:...    84   2e-15
AJ238321_1(AJ238321|pid:none) Asellus aquaticus 5S rRNA gene, hi...    83   4e-15
BC076088_1(BC076088|pid:none) Danio rerio zgc:92591, mRNA (cDNA ...    83   4e-15
(P35069) RecName: Full=Histone H2B.3;  &D56612(D56612) &FB334712...    83   4e-15
AB435638_1(AB435638|pid:none) Oryzias latipes H2B mRNA for histo...    83   4e-15
(Q8I1N0) RecName: Full=Histone H2B;  &AB073635_3(AB073635|pid:no...    82   5e-15

 psg: 0.88  gvh: 0.37  alm: 0.40  top: 0.23  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VSC173 is cyt

>VSC173Z.Seq
----------CCAAAGCCATGTCTGTAATGAACTCCTTTGTCCACGATATNTTTGACNGA
ATCGCCACCGAAGCTTCTGGTTTAGCCAAAAAGAAGAAGAGACAAACTTTACACTCAAGA
GATATTCAAGTTGCCGTTCGTATCATTCTCACTGGTGAGTTAGCTAAACATGCCATCTTA
CAAGGTATGACTGCTGTCAACAAGTACAATCCAACTGAAAGCAAAAACTAAATTGGTTCC
AAATGAACTATATTCCTTAAAAAAATATAGTTTCCAATTTTCTTTTTTTTTGTACTCTCT
NTATCATTCTTTTTTAAAAAAAAAAAAAATCA