>VSC123 (VSC123Q) /CSM/VS/VSC1-A/VSC123Q.Seq.d/
XXXXXXXXXXTAAAGTTTATTCAAACGGTTCAAACCTTGTTAACTTTTCAAAGAATTCCA
TAGATTCAAGCAAATTCTTATCAACCCTTAATTTAAGTTGTAGGAACGAAAGATTCGGTT
CATTGTATGCTATCCCCAAATATTCTTTCAACACTTTATCTGCTGAACAAAGATTCTTAG
AAGAAGTAGGTGACAATGGTGGTAATCCAGCTCTCAACCCATCNCCAAGGTAATTTTATT
TGTATATATAAATTTNTATACAAATTTTGTAAATAAATAAATAATAATAAAAAAAAAACT
AAAAAAAACACTGTATTTTTGTAAAAAAAAAAAAAAA

---KVYSNGSNLVNFSKNSIDSSKFLSTLNLSCRNERFGSLYAIPKYSFNTLSAEQRFLE
EVGDNGGNPALNPSPR*fylyi*ixiqil*ink***kkn*kkhcifvkkkk

Frame A:
---KVYSNGSNLVNFSKNSIDSSKFLSTLNLSCRNERFGSLYAIPKYSFNTLSAEQRFLE
EVGDNGGNPALNPSPR*fylyi*ixiqil*ink***kkn*kkhcifvkkkk


Frame B:
---kfiqtvqtlltfqrip*iqansyqpli*vvgtkdsvhcmlspnilstlyllnkds*k
k*vtmvviqlsthxqgnficiykfxykfck*innnkkktkkntvfl*kkkk


Frame C:
---slfkrfkpc*lfkefhrfkqilinp*fkl*erkirfivcypqiffqhfic*tkilrr
sr*qww*sssqpixkvilfvyinxytnfvnk*iiikkklkktlyfckkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC123 (VSC123Q) /CSM/VS/VSC1-A/VSC123Q.Seq.d/                        430   e-120
VSJ420 (VSJ420Q) /CSM/VS/VSJ4-A/VSJ420Q.Seq.d/                        357   7e-98
VSI855 (VSI855Q) /CSM/VS/VSI8-C/VSI855Q.Seq.d/                        357   7e-98
VSF375 (VSF375Q) /CSM/VS/VSF3-D/VSF375Q.Seq.d/                        357   7e-98
VSC250 (VSC250Q) /CSM/VS/VSC2-C/VSC250Q.Seq.d/                        357   7e-98
VSA436 (VSA436Q) /CSM/VS/VSA4-B/VSA436Q.Seq.d/                        357   7e-98
SSL612 (SSL612Q) /CSM/SS/SSL6-A/SSL612Q.Seq.d/                        357   7e-98
SSI843 (SSI843Q) /CSM/SS/SSI8-B/SSI843Q.Seq.d/                        357   7e-98
VSF741 (VSF741Q) /CSM/VS/VSF7-B/VSF741Q.Seq.d/                        351   4e-96
SSM761 (SSM761Q) /CSM/SS/SSM7-C/SSM761Q.Seq.d/                        349   2e-95

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL590825|AL590825.11 Human DNA sequence from clone RP11-449C5 on chromosome 6.    46  0.27  1
AQ557416|AQ557416.1 HS_2081_A1_C10_MR CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=2081 Col=19 Row=E, DNA sequence.    36  0.35  2
AC113342|AC113342.2 Homo sapiens chromosome 5 clone CTD-2344D1, complete sequence.    38  0.87  2
AC116355|AC116355.1 Homo sapiens chromosome 5 clone RP11-622B20, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  1.3  2
AP001605|AP001605.1 Homo sapiens genomic DNA, chromosome 21, clone:KB1987H1, APP-D21S292 region.    36  3.6  4
AC120235|AC120235.4 Rattus norvegicus clone CH230-83F19, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42  4.2  1
CC479660|CC479660.1 CH240_306P17.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_306P17, genomic survey sequence.    42  4.2  1
BZ928969|BZ928969.1 CH240_33B21.TV CHORI-240 Bos taurus genomic clone CH240_33B21, genomic survey sequence.    42  4.2  1
AL359702|AL359702.4 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-131E5.    40     17  1
BX101059|BX101059.1 RZPD Homo sapiens cDNA clone IMAGp998G186085 = IMAGE:2447273 3' EST.    40     17  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001401_547(CP001401|pid:none) Sulfolobus islandicus M.16.27, c...    37   0.22
EF494739_11(EF494739|pid:none) Blastocystis sp. DMP/02-328 mitoc...    35   1.1
AE006641_1741(AE006641|pid:none) Sulfolobus solfataricus P2, com...    33   4.1
X61658_1(X61658|pid:none) B.brevis grsB gene for gramicidin S sy...    32   9.2
(P0C063) RecName: Full=Gramicidin S synthetase 2; AltName: Full=...    32   9.2

 psg: 0.77  gvh: 0.35  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VSC123 is mit

>VSC123Z.Seq
----------TAAAGTTTATTCAAACGGTTCAAACCTTGTTAACTTTTCAAAGAATTCCA
TAGATTCAAGCAAATTCTTATCAACCCTTAATTTAAGTTGTAGGAACGAAAGATTCGGTT
CATTGTATGCTATCCCCAAATATTCTTTCAACACTTTATCTGCTGAACAAAGATTCTTAG
AAGAAGTAGGTGACAATGGTGGTAATCCAGCTCTCAACCCATCNCCAAGGTAATTTTATT
TGTATATATAAATTTNTATACAAATTTTGTAAATAAATAAATAATAATAAAAAAAAAACT
AAAAAAAACACTGTATTTTTGTAAAAAAAAAAAAAAA