>VSC107 (VSC107Q) /CSM/VS/VSC1-A/VSC107Q.Seq.d/
XXXXXXXXXXTTTTATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAGGTG
GTGATGCCTTCTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTC
TTCCATATACAATTCCAACTTGTCCACCAGCTCAACAACCATGTTTAAATTTTGTCAACA
CTCCATCATGTACTAAAGAGTGTCAATCAAATTCCTCTTTAATTTATTCTCAAGACAAAC
ATAAAATGGCTAAAATTTATTCTTTCGACTCTGATGAAGCAATCATGCAAGAAATTGTTA
CTAATGGTCCAGTCGAAGCTTGTTTCACTGTCTTTGAAGATTTCCTTGCTTACAAATCTG
GTGTTTACGTCCACACAACTGGTAAAGATTTAGGTGGTCACTGTGTTAAACTCGTTGGTT
TCGGTACCTTAAATGGTGTTGATTACTATGCCGCTAACAACCAATGGACAACTTCATGGG
GTGATAATGGAACTTTCTTAATCAAACGTGGTGATTGCGGTATCTCTGATGACGTTGTTG
CTGGTTTACCATAAATAAAAATAAGTTTTAAACATTTTGTAAAA

---FMDMVTCDETDNGCEGGDAFSAWNWLRKQGAVSEECLPYTIPTCPPAQQPCLNFVNT
PSCTKECQSNSSLIYSQDKHKMAKIYSFDSDEAIMQEIVTNGPVEACFTVFEDFLAYKSG
VYVHTTGKDLGGHCVKLVGFGTLNGVDYYAANNQWTTSWGDNGTFLIKRGDCGISDDVVA
GLP*ikisfkhfvk

Frame A:
---FMDMVTCDETDNGCEGGDAFSAWNWLRKQGAVSEECLPYTIPTCPPAQQPCLNFVNT
PSCTKECQSNSSLIYSQDKHKMAKIYSFDSDEAIMQEIVTNGPVEACFTVFEDFLAYKSG
VYVHTTGKDLGGHCVKLVGFGTLNGVDYYAANNQWTTSWGDNGTFLIKRGDCGISDDVVA
GLP*ikisfkhfvk


Frame B:
---lwiwllvmklitvvkvvmpslhgig*eskvlyqknvfhiqfqlvhqlnnhv*ilstl
hhvlksvnqipl*filktnikwlkfilstlmkqsckklllmvqsklvslslkislltnlv
ftstqlvki*vvtvlnslvsvp*mvlitmplttngqlhgvimels*snvviavslmtlll
vyhk*k*vlnil*


Frame C:
---ygygyl**n**rl*rw*cllcmelvkkarccirrmssiynsnlstssttmfkfcqhs
imy*rvsikflfnlfsrqt*ng*nlffrl**snharncy*wssrslfhcl*rfpclqiwc
lrphnw*rfrwslc*trwfrylkwc*llcr*qpmdnfmg**wnflnqtw*lryl**rccw
ftinknkf*tfck

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC107 (VSC107Q) /CSM/VS/VSC1-A/VSC107Q.Seq.d/                       1138   0.0
SSL106 (SSL106Q) /CSM/SS/SSL1-A/SSL106Q.Seq.d/                       1134   0.0
SSK863 (SSK863Q) /CSM/SS/SSK8-C/SSK863Q.Seq.d/                       1134   0.0
SSK787 (SSK787Q) /CSM/SS/SSK7-D/SSK787Q.Seq.d/                       1134   0.0
SSK654 (SSK654Q) /CSM/SS/SSK6-C/SSK654Q.Seq.d/                       1134   0.0
SSE709 (SSE709Q) /CSM/SS/SSE7-A/SSE709Q.Seq.d/                       1134   0.0
SLH613 (SLH613Q) /CSM/SL/SLH6-A/SLH613Q.Seq.d/                       1134   0.0
SSK354 (SSK354Q) /CSM/SS/SSK3-C/SSK354Q.Seq.d/                       1132   0.0
VSB170 (VSB170Q) /CSM/VS/VSB1-C/VSB170Q.Seq.d/                       1128   0.0
SSL776 (SSL776Q) /CSM/SS/SSL7-D/SSL776Q.Seq.d/                       1128   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX248131|BX248131.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-236P5.    50  0.031  1
AL022310|AL022310.1 Human DNA sequence from clone 395P12 on chromosome 1q24-25. Contains the TXGP1 gene for tax-transcriptionally activated glycoprotein 1  (34kD) (OX40 ligand, OX40L) and a GOT2 (Aspartate Aminotransferase,  mitochondrial precursor, EC 2.6.1.1, Transaminase A, Glutamate  Oxaloacetate Transaminase-2) pseudogene. Contains ESTs, STSs and  GSSs.    48  0.12  1
AL677696|AL677696.1 Xenopus tropicalis EST, clone TNeu057j18 5'.    48  0.12  1
CF264541|CF264541.1 AGENCOURT_15137220 NICHD_XGC_Emb7 Silurana tropicalis cDNA clone IMAGE:6976704 5', mRNA sequence.    48  0.12  1
AX346142|AX346142.1 Sequence 1213 from Patent WO0200928.          44  0.33  2
AC124778|AC124778.2 Mus musculus chromosome UNK clone RP23-92N3, WORKING DRAFT SEQUENCE, 4 unordered pieces.    46  0.48  1
AC116824|AC116824.4 Mus musculus clone RP24-366J7, WORKING DRAFT SEQUENCE, 7 ordered pieces.    46  0.48  1
AZ448597|AZ448597.1 1M0246E23F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0246E23 F, DNA sequence.    46  0.48  1
AC142173|AC142173.2 Rattus norvegicus clone CH230-135C19, WORKING DRAFT SEQUENCE, 64 unordered pieces.    46  0.48  1
AC128755|AC128755.3 Rattus norvegicus clone CH230-183F18, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    46  0.48  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QD9) RecName: Full=Cathepsin B;          EC=3.4.22.1; AltNam...   389   e-107
BC072490_1(BC072490|pid:none) Rattus norvegicus cathepsin B, mRN...   171   2e-41
(P00787) RecName: Full=Cathepsin B;          EC=3.4.22.1; AltNam...   171   2e-41
M11305_1(M11305|pid:none) Rat cathepsin B mRNA, 3' end.               171   2e-41
EU532428_1(EU532428|pid:none) Sus scrofa cathepsin B (CTSB) gene...   170   2e-41
(A1E295) RecName: Full=Cathepsin B;          EC=3.4.22.1; Contai...   170   2e-41
AC149038_4(AC149038|pid:none) Medicago truncatula chromosome 7 c...   169   7e-41
BC115254_1(BC115254|pid:none) Danio rerio capthepsin B, b, mRNA ...   168   9e-41
(P07688) RecName: Full=Cathepsin B;          EC=3.4.22.1; AltNam...   167   2e-40
AY888604_1(AY888604|pid:none) Synthetic construct Homo sapiens c...   166   6e-40

 psg: 0.75  gvh: 0.42  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VSC107 is cyt

>VSC107Z.Seq
----------TTTTATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAGGTG
GTGATGCCTTCTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTC
TTCCATATACAATTCCAACTTGTCCACCAGCTCAACAACCATGTTTAAATTTTGTCAACA
CTCCATCATGTACTAAAGAGTGTCAATCAAATTCCTCTTTAATTTATTCTCAAGACAAAC
ATAAAATGGCTAAAATTTATTCTTTCGACTCTGATGAAGCAATCATGCAAGAAATTGTTA
CTAATGGTCCAGTCGAAGCTTGTTTCACTGTCTTTGAAGATTTCCTTGCTTACAAATCTG
GTGTTTACGTCCACACAACTGGTAAAGATTTAGGTGGTCACTGTGTTAAACTCGTTGGTT
TCGGTACCTTAAATGGTGTTGATTACTATGCCGCTAACAACCAATGGACAACTTCATGGG
GTGATAATGGAACTTTCTTAATCAAACGTGGTGATTGCGGTATCTCTGATGACGTTGTTG
CTGGTTTACCATAAATAAAAATAAGTTTTAAACATTTTGTAAAA