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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSB834
Library VS
(Link to library)
Clone ID VSB834
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16208-1
Original site URL
Representative seq. ID VSB834Z
(Link to Original site)
Representative DNA sequence 
>VSB834 (VSB834Q) /CSM/VS/VSB8-B/VSB834Q.Seq.d/
XXXXXXXXXXATCTATAGCTGAACAATTATTAGAAGGTGAAAATGAAGATGAAGATGATG
ATATATCAAGTTGGATAAATAAATCAAGACTAAATGAAAAACAATGACAAATTGAAAGTA
AGAAAGAATTATTAAATAAAAAACAACCAAAACAACAACAACATTATAATCAAAGTAATT
TAAAGGGTATGAAAGTTGGTAATGATATTAAATATTTTGAAGATGAAAATGAACATATTT
TAACTTTACAAGATTCAAGTGTATTAGAAGATTCTGAGGATGTATTGATAAATGTTAATT
TAAA
sequence update 2000. 4.14
Translated Amino Acid sequence 
---siaeqllegenededddisswinksrlnekq*QIESKKELLNKKQPKQQQHYNQSNL
KGMKVGNDIKYFEDENEHILTLQDSSVLEDSEDVLINVNL
Translated Amino Acid sequence (All Frames) 
Frame A:
---siaeqllegenededddisswinksrlnekq*QIESKKELLNKKQPKQQQHYNQSNL
KGMKVGNDIKYFEDENEHILTLQDSSVLEDSEDVLINVNL


Frame B:
---l*lnny*kvkmkmkmmiyqvg*inqd*mknndklkvrkny*iknnqnnnniiikvi*
rv*klvmilnilkmkmnif*lykiqvy*kilrmy**mli*


Frame C:
---ys*tiirr*k*r*r**yikldk*iktk*ktmtn*k*eriik*kttkttttl*sk*fk
gyesw**y*if*r*k*tyfnftrfkcirrf*gcidkc*fk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC863 (VSC863Q) /CSM/VS/VSC8-C/VSC863Q.Seq.d/                        280   1e-74
VSB834 (VSB834Q) /CSM/VS/VSB8-B/VSB834Q.Seq.d/                        280   1e-74
FC-AE05 (FC-AE05Q) /CSM/FC/FC-AE/FC-AE05Q.Seq.d/                      278   5e-74
VHH281 (VHH281Q) /CSM/VH/VHH2-D/VHH281Q.Seq.d/                        147   1e-34
AFD395 (AFD395Q) /CSM/AF/AFD3-D/AFD395Q.Seq.d/                         50   2e-05
VSD212 (VSD212Q) /CSM/VS/VSD2-A/VSD212Q.Seq.d/                         42   0.005
VHP393 (VHP393Q) /CSM/VH/VHP3-D/VHP393Q.Seq.d/                         42   0.005
VHC887 (VHC887Q) /CSM/VH/VHC8-D/VHC887Q.Seq.d/                         42   0.005
SHA674 (SHA674Q) /CSM/SH/SHA6-D/SHA674Q.Seq.d/                         42   0.005
VSB230 (VSB230Q) /CSM/VS/VSB2-B/VSB230Q.Seq.d/                         40   0.019
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BG603430|BG603430.1 EST502520 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDR51, mRNA sequence.    42  7e-05  3
AU087765|AU087765.1 Plasmodium falciparum 3D7 cDNA clone from Sugano malaria cDNA library: XPFn5652.    44  4e-04  2
AL132958|AL132958.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T4D2.    44  0.001  2
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    40  0.001  7
BG601380|BG601380.1 EST500470 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDB58, mRNA sequence.    36  0.003  3
BG602949|BG602949.1 EST502039 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDM34, mRNA sequence.    36  0.003  3
BG602396|BG602396.1 EST501486 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDH71, mRNA sequence.    36  0.003  3
BG602858|BG602858.1 EST501948 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDL41, mRNA sequence.    36  0.003  3
BG603486|BG603486.1 EST502576 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDS17, mRNA sequence.    36  0.003  3
BG603370|BG603370.1 EST502460 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDQ89, mRNA sequence.    36  0.005  3
dna update 2003. 8.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017349_367(AE017349|pid:none) Cryptococcus neoformans var. neo...    59   4e-08
AE017349_368(AE017349|pid:none) Cryptococcus neoformans var. neo...    59   4e-08
BC076544_1(BC076544|pid:none) Danio rerio squamous cell carcinom...    54   2e-06
AY814260_1(AY814260|pid:none) Schistosoma japonicum SJCHGC09169 ...    53   4e-06
FN357917_9(FN357917|pid:none) Schistosoma mansoni genome sequenc...    53   4e-06
AE014134_2202(AE014134|pid:none) Drosophila melanogaster chromos...    52   5e-06
AF299060_1(AF299060|pid:none) Tetraodon nigroviridis squamous-ce...    52   6e-06
AF129931_1(AF129931|pid:none) Mus musculus hypoxia associated fa...    50   2e-05
AF042797_4(AF042797|pid:none) Takifugu rubripes FRG1 (FRG1), N-a...    50   2e-05
BC028823_1(BC028823|pid:none) Mus musculus squamous cell carcino...    50   2e-05
protein update 2009. 7.28
PSORT 

 psg: 0.37  gvh: 0.30  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSB834 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSB834Z
3' end seq. 
>VSB834Z.Seq
----------ATCTATAGCTGAACAATTATTAGAAGGTGAAAATGAAGATGAAGATGATG
ATATATCAAGTTGGATAAATAAATCAAGACTAAATGAAAAACAATGACAAATTGAAAGTA
AGAAAGAATTATTAAATAAAAAACAACCAAAACAACAACAACATTATAATCAAAGTAATT
TAAAGGGTATGAAAGTTGGTAATGATATTAAATATTTTGAAGATGAAAATGAACATATTT
TAACTTTACAAGATTCAAGTGTATTAGAAGATTCTGAGGATGTATTGATAAATGTTAATT
TAAA
Length of 3' end seq. 294
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -