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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSB832
Library VS
(Link to library)
Clone ID VSB832
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15012-1
Original site URL
Representative seq. ID VSB832E
(Link to Original site)
Representative DNA sequence 
>VSB832 (VSB832Q) /CSM/VS/VSB8-B/VSB832Q.Seq.d/
ATCATTTTGGCTGAATTCAAATATGGCTTTGAAGTTGACGAATCCCTTCCATTCGATCAA
TCAAAAGAATCTTACTTCCCAATGTTCTTAAAAAAGTACGTTTTCCCAACCGCTTATTGG
GAAGGTATGTTAAAAGGTCGTTGGTTCGGTAAAAATACTCTCTTCAATCCAATTAAAACC
CCAGAAATTAATTAAATAATATTAATAATAATAATAGCTTATATTTTTTTTTTTTTAAAA
AAAAAAAAATAATTTTAAATAAAATAAGAAACATATTTATTAAA
sequence update 2000. 4.14
Translated Amino Acid sequence 
IILAEFKYGFEVDESLPFDQSKESYFPMFLKKYVFPTAYWEGMLKGRWFGKNTLFNPIKT
PEIN*iiliiiiayiffflkkkk*f*ik*etyll
Translated Amino Acid sequence (All Frames) 
Frame A:
IILAEFKYGFEVDESLPFDQSKESYFPMFLKKYVFPTAYWEGMLKGRWFGKNTLFNPIKT
PEIN*iiliiiiayiffflkkkk*f*ik*etyll


Frame B:
sfwlnsnmalkltnpfhsinqknltsqcs*kstfsqpligkvc*kvvgsvkilssiqlkp
qklik*y*****liffff*kkknnfk*nkkhiy*


Frame C:
hfg*iqiwl*s*ripsirsikrillpnvlkkvrfpnrllgryvkrslvr*kyslqsn*np
rn*lnninnnnslyffffkkkkiilnkirnifik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE859 (VSE859Q) /CSM/VS/VSE8-C/VSE859Q.Seq.d/                        367   e-101
VSE730 (VSE730Q) /CSM/VS/VSE7-B/VSE730Q.Seq.d/                        367   e-101
VSB832 (VSB832Q) /CSM/VS/VSB8-B/VSB832Q.Seq.d/                        367   e-101
SLI747 (SLI747Q) /CSM/SL/SLI7-B/SLI747Q.Seq.d/                        367   e-101
VSJ702 (VSJ702Q) /CSM/VS/VSJ7-A/VSJ702Q.Seq.d/                        359   1e-98
CFJ183 (CFJ183Q) /CSM/CF/CFJ1-D/CFJ183Q.Seq.d/                        337   5e-92
VHH541 (VHH541Q) /CSM/VH/VHH5-B/VHH541Q.Seq.d/                         36   0.27
VHD873 (VHD873Q) /CSM/VH/VHD8-D/VHD873Q.Seq.d/                         36   0.27
VHC145 (VHC145Q) /CSM/VH/VHC1-B/VHC145Q.Seq.d/                         36   0.27
VHA423 (VHA423Q) /CSM/VH/VHA4-A/VHA423Q.Seq.d/                         36   0.27
own update 2003. 1. 8
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC004157|AC004157.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   0.051  5
AF254982|AF254982.4 Homo sapiens chromosome 21 clone CTD-2503J9 map p11-q21.1, complete sequence.    36   0.24   4
AC019127|AC019127.10 Homo sapiens BAC clone RP11-558B7 from 2, complete sequence.    40   0.34   3
AC141922|AC141922.18 Medicago truncatula clone mth2-9n11, complete sequence.    38   0.36   3
AC025417|AC025417.4 Genomic sequence for Arabidopsis thaliana BAC T12C24 from chromosome I, complete sequence.    38   0.41   2
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             32   0.49   2
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     32   0.49   2
AP001118|AP001118.1 Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence, segment 1/2.    32   0.51   2
AC024199|AC024199.4 Homo sapiens chromosome 7 clone RP11-795O24, WORKING DRAFT SEQUENCE, 8 unordered pieces.    34   0.72   5
CE196965|CE196965.1 tigr-gss-dog-17000372135413 Dog Library Canis familiaris genomic, genomic survey sequence.    32   0.74   2
dna update 2004. 2.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54DK1) RecName: Full=Sulfide:quinone oxidoreductase, mitochond...   139   2e-32
FN314681_1(FN314681|pid:none) Schistosoma japonicum isolate Anhu...    60   2e-08
FN357477_4(FN357477|pid:none) Schistosoma mansoni genome sequenc...    60   2e-08
FN357477_5(FN357477|pid:none) Schistosoma mansoni genome sequenc...    60   2e-08
CP000009_919(CP000009|pid:none) Gluconobacter oxydans 621H, comp...    58   1e-07
CP001337_45(CP001337|pid:none) Chloroflexus aggregans DSM 9485, ...    55   8e-07
CP000804_3543(CP000804|pid:none) Roseiflexus castenholzii DSM 13...    55   8e-07
CP000909_3813(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...    55   8e-07
T20522(T20522) hypothetical protein F02H6.5 - Caenorhabditis ele...    54   1e-06
AE016879_2333(AE016879|pid:none) Bacillus anthracis str. Ames, c...    54   2e-06
protein update 2009. 7.28
PSORT 

 psg: 0.75  gvh: 0.26  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSB832 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSB832E
Full length Seq. 
>VSB832E.Seq
ATCATTTTGGCTGAATTCAAATATGGCTTTGAAGTTGACGAATCCCTTCCATTCGATCAA
TCAAAAGAATCTTACTTCCCAATGTTCTTAAAAAAGTACGTTTTCCCAACCGCTTATTGG
GAAGGTATGTTAAAAGGTCGTTGGTTCGGTAAAAATACTCTCTTCAATCCAATTAAAACC
CCAGAAATTAATTAAATAATATTAATAATAATAATAGCTTATATTTTTTTTTTTTTAAAA
AAAAAAAAATAATTTTAAATAAAATAAGAAACATATTTATTAAA
Length of full length seq. 284