>VSB780 (VSB780Q) /CSM/VS/VSB7-D/VSB780Q.Seq.d/
GTCGTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAACTCCTCATTGAGAAGCATTACC
CAAGACTTACCAATGACTTTGACACTAACAAGAGAACTTGCGACAAACTCGCCAAGATCC
CATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATTTAATGAGACGTATTG
CTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAGAAAGAGAAAAGAGAG
ATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTAAAATCGATCGTGATG
TTGAAGAAATGCTTAAATTTACTTTGGAATTCCCAACCATCCCACAAATCCACGTCGTTG
ACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAACGTCAGATTGTTGAT
TATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

RVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCTHLMRRIA
NGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKFTLEFPTIPQIHVVD
QKRYNKNTKKSNK*tsdc*lykkkkkkkkkkkkk

Frame A:
vvleqrqskelpnsslrsitqdlpmtltltrelatnsprshqnv*etrllvsvpi**dvl
lmvqsvvfltnykkkkekreittfhknqpskptklksivmlkkclnllwnsqpshkstsl
tkrdttktpknqtnkrqivdyikkkkkkkkkkkk


Frame B:
sc*nkdnqksfqtph*ealpktyq*l*h*qenlrqtrqdpiktfkkqdcwflypfnetyc
*wsspwyflqitrrrkrker*lrstrishqnqrs*nrs*c*rna*iyfgipnhptnprr*
pkeiqqkhqkikqinvrllii*kkkkkkkkkkkk


Frame C:
RVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCTHLMRRIA
NGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKFTLEFPTIPQIHVVD
QKRYNKNTKKSNK*tsdc*lykkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB780 (VSB780Q) /CSM/VS/VSB7-D/VSB780Q.Seq.d/                        428   e-119
VSJ410 (VSJ410Q) /CSM/VS/VSJ4-A/VSJ410Q.Seq.d/                        420   e-117
VSI470 (VSI470Q) /CSM/VS/VSI4-C/VSI470Q.Seq.d/                        420   e-117
VSI273 (VSI273Q) /CSM/VS/VSI2-D/VSI273Q.Seq.d/                        420   e-117
VSI191 (VSI191Q) /CSM/VS/VSI1-D/VSI191Q.Seq.d/                        420   e-117
VSH760 (VSH760Q) /CSM/VS/VSH7-C/VSH760Q.Seq.d/                        420   e-117
VSH591 (VSH591Q) /CSM/VS/VSH5-D/VSH591Q.Seq.d/                        420   e-117
VSG239 (VSG239Q) /CSM/VS/VSG2-B/VSG239Q.Seq.d/                        420   e-117
VSG216 (VSG216Q) /CSM/VS/VSG2-A/VSG216Q.Seq.d/                        420   e-117
VSF388 (VSF388Q) /CSM/VS/VSF3-D/VSF388Q.Seq.d/                        420   e-117

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L35173|L35173.1 Dictyostelium discoideum ribosomal protein (rps17) gene, complete cds.   420   e-172  4
BG259081|BG259081.1 602379133F1 NIH_MGC_92 Homo sapiens cDNA clone IMAGE:4509608 5', mRNA sequence.    50   4e-05  2
BQ434132|BQ434132.1 AGENCOURT_7808782 NIH_MGC_92 Homo sapiens cDNA clone IMAGE:6069301 5', mRNA sequence.    50   4e-05  2
AA390236|AA390236.1 CpEST.220 pSKIIminusCpIOWAsporoLib2 Cryptosporidium parvum cDNA 5' similar to 40S ribosomal protein S17A, mRNA sequence.    44   0.002  2
Z35178|Z35178.1 A. thaliana transcribed sequence; clone TBT6B09; 5' end; Similar to ribosomal protein S17 ; Homo sapiens.    34   0.007  3
CD477300|CD477300.1 eca01-12ms1-h08 Eca01 Eschscholzia californica cDNA clone eca01-12ms1-h08 5', mRNA sequence.    42   0.008  2
CD476897|CD476897.1 eca01-7ms1-c05 Eca01 Eschscholzia californica cDNA clone eca01-7ms1-c05 5', mRNA sequence.    42   0.008  2
CD477145|CD477145.1 eca01-14ms1-h01 Eca01 Eschscholzia californica cDNA clone eca01-14ms1-h01 5', mRNA sequence.    42   0.009  2
AV550624|AV550624.1 Arabidopsis thaliana cDNA clone:RZ115a12R, 5' end.    34   0.012  3
AV822668|AV822668.1 Arabidopsis thaliana cDNA clone:RAFL05-10-D01, 5'-end.    34   0.012  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU124942_1(EU124942|pid:none) Arenicola marina ribosomal protein...   154   1e-36
EU247177_1(EU247177|pid:none) Lycosa singoriensis clone LSsin973...   153   2e-36
AY857475_1(AY857475|pid:none) Suberites domuncula S17 mRNA, comp...   153   2e-36
DQ066305_1(DQ066305|pid:none) Ixodes scapularis isolate IS-6-12L...   152   5e-36
AF548334_1(AF548334|pid:none) Branchiostoma belcheri ribosomal p...   151   6e-36
(A5PK63) RecName: Full=40S ribosomal protein S17;  &BC142374_1(B...   151   8e-36
BC091562_1(BC091562|pid:none) Danio rerio zgc:114188, mRNA (cDNA...   151   8e-36
AY892179_1(AY892179|pid:none) Synthetic construct Homo sapiens c...   150   1e-35
BT058153_1(BT058153|pid:none) Salmo salar clone Contig981 40S ri...   150   1e-35
(P08708) RecName: Full=40S ribosomal protein S17;  &AB174364_1(A...   150   1e-35

 psg: 0.60  gvh: 0.25  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.03
 nuc: 0.23  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: nuclear

>> prediction for VSB780 is cyt

>VSB780E.Seq
GTCGTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAACTCCTCATTGAGAAGCATTACC
CAAGACTTACCAATGACTTTGACACTAACAAGAGAACTTGCGACAAACTCGCCAAGATCC
CATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATTTAATGAGACGTATTG
CTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAGAAAGAGAAAAGAGAG
ATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTAAAATCGATCGTGATG
TTGAAGAAATGCTTAAATTTACTTTGGAATTCCCAACCATCCCACAAATCCACGTCGTTG
ACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAACGTCAGATTGTTGAT
TATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA